VICENTE ARNAU LLOMBART
PDI-Titular d'Universitat
Director/a Titulacio Master Oficial
PDI-Titular d'Universitat
Director/a Titulacio Master Oficial
Knowledge area: COMPUTER ARCHITECTURE AND TECHNOLOGY
Department: Computer Science
Department: Computer Science
Despacho 2.3.32. ETSE. Avenida de la Universidad s/n. CP: 46100 Burjasot (Valencia).
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I2SysBio. Parque Científico de la UV. Despacho B12.
(9635) 43061
(9635) 43061
Biography
[Biography, english version]
Subjects taught and teaching methods
Tutorials
| Anual |
| Monday de 10:30 a 13:30. DESPACHO B.1.2 (I2SYSBIO-PCUV) |
| Observations |
| You participate in the electronic tutoring program of the Universitat de València |
Journal Publications
- V. ARNAU, I. MARÍN (2004) Fast analysis of highly repetitive sequences in human chromosomes using a novel search algorithm. WSEAS Transactions in Biology and Biomedicine, 1, pp. 107 - 111 . ISSN: 1109-9518
- V. ARNAU, S. MARS, I. MARÍN (2005) Iterative cluster analysis of protein interaction data. Bioinformatics, 21, pp. 364 - 378 . ISSN: 1367-4803
- J. Ignasi Lucas, Vicente Arnau, Ignacio Marín (2006) Comparative genomics and protein domain graph analyses link ubiquitination and RNA metabolism. Journal of Molecular Biology, 357, pp. 9 - 17 . ISSN: 0022-2836
- V. ARNAU, M. GALLACH, J. I. LUCAS, I. MARÍN (2006) UVPAR: fast detection of functional shifts in duplicate genes. Bmc Bioinformatics, 7, pp. 174(1) - 174(12) . ISSN: 1471-2105
- X. Y. YANG, A. RIPOLL, V. ARNAU, I. MARÍN, E. LUQUE (2006) Genomic-scale analysis of DNA words of arbitrary length by parallel computation. NIC SERIES, 33, pp. 623 - 630
- M. J. Maldonado, V. Arnau, R. Martínez-Costa, A. Navea, F. M. Micó, A. L. Cisneros, J. L. Menezo (1997) Reproducibility of digital image analysis for measuring corneal haze after myopic photorefractive keratectomy. American Journal of Ophthalmology, 123(1), pp. 31 - 41 . ISSN: 0002-9394
- M. J. Maldonado, V. Arnau, A. Navea, R. Martínez-Costa, F. M. Micó, A. L. Cisneros, J. L. Menezo (1996) Direct objective quantification of corneal haze following excimer laser photorefractive keratectomy for high myopia. Ophthalmology, 103, pp. 1970 - 1978 . ISSN: 0161-6420
- A.Palomares, A.Lorente, V. Arnau, F Martínez Verd, J.M.Articas (1997) A new method for the optimum generation of real colors on CRT monitors. Journal Of Optics, 28, pp. 107 - 111 . ISSN: 2040-8978
- Miguel Gallach, Vicente Arnau, Ignacio Marin (2007) Global patterns of sequence evolution in Drosophila. Bmc Genomics, 8(408), pp. 1 - 18 . ISSN: 1471-2164
- V. ARNAU, M. GALLACH, I. MARÍN (2008) Fast comparison of DNA sequences by oligonucleotide profiling. BMC Research Notes, 1(5), pp. 1 - 5 . ISSN: 1756-0500
- Alic, Andrei; Pérez Ortín, José Enrique; Moreno Mariño, Joaquín.; Arnau LLombart, Vicente (2013) mRNAstab. A web application for mRNA stability analysis. Bioinformatics, 29, pp. 813 - 814 . ISSN: 1367-4803
- Miguel Gallach , Vicente Arnau , Rodrigo Aldecoa and Ignacio Marin. (2010) A sequence motif enriched in regions bound by the Drosophila dosage compensation complex. Bmc Genomics, 11(169), pp. 1 - 14 . ISSN: 1471-2164
- Joaquín Tárraga, Vicente Arnau, Héctor Martínez, Raul Moreno, Diego Cazorla, José Salavert-Torres, Ignacio Blanquer-Espert, Joaquín Dopazo and Ignacio Medina (2014) Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinformatics, 20(23), pp. 2296 - 3398 . ISSN: 1367-4803
- Juanes JM, Miguel A, Morales LJ, Pérez-Ortín JE, Arnau V (2015) A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data. Bioinformatics, 31(19), pp. 3228 - 3230 . ISSN: 1367-4803
- V. ARNAU, I. MARIN (2003) A hierarchical clustering strategy and its application to proteomic interaction data. Lecture Notes in Computer Science, 2652, pp. 62 - 69 . ISSN: 0302-9743
- Vicente Arnau, Juan Manuel Orduña, Salvador Moreno, Rodrigo Valero, Aurelio Ruiz (2000) A Clustering Approach for Improving Network Performance in Heterogeneous Systems. Lecture Notes in Computer Science, 1900, pp. 1206 - 1209 . ISSN: 0302-9743
- Joaquin Tarraga; Asunción Gallego; Vicente Arnau; Ignacio Medina; Joaquin Dopazo (2016) HPG pore: an efficient and scalable framework for nanopore sequencing data. Bmc Bioinformatics, 17(107), pp. 1 - 7 . ISSN: 1471-2105
- Antonio Fabregat; Konstantinos Sidiropoulos; Guilherme Viteri; Oscar Forner; Pablo Marin-Garcia; Vicente Arnau; Peter D'Eustachio; Lincoln Stein and Henning Hermjakob. (2017) 'Reactome pathway analysis: a highperformance in-memory approach'. Bmc Bioinformatics, 18(142), pp. 1 - 9 . ISSN: 1471-2105
- F.M. Verdú, J. Malo, V. Arnau, A. Felipe, J.M. Artigas (1996) A new chromatic encoding for machine vision invariant to the change of illuminant. Journal Of Optics, 27(4), pp. 171 - 181 . ISSN: 2040-8978
- José M. Juanes; Asunción Gallego; Joaquín Tárraga; Felipe J. Chaves; Pablo Marín-Garcia; Ignacio Medina; Vicente Arnau; Joaquín Dopazo (2017) VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy. Bmc Bioinformatics, 18:421 . ISSN: 1471-2105
- Jose Manuel Martí; L.F. Arias-Giraldo; Wladimiro Díaz-Villanueva; Vicente Arnau; Antonio Rodríguez-Franco; Carlos P. Garay (2020) Metatranscriptomic dynamics after Verticillium dahliae infection and root damage in Olea europaea. Bmc Plant Biology, 20(79) . ISSN: 1471-2229
- Almudena Devesa-Peiro; Patricia Sebastian-Leon; Francisco Garcia-Garcia; Vicente Arnau; Alejandro Aleman; Antonio Pellicer; Patricia Diaz-Gimeno (2020) Uterine disorders affecting female fertility: what are the molecular functions altered in endometrium?. Fertility and Sterility, 113(6), pp. 1261 - 1274 . ISSN: 0015-0282
- Andrés Moya; José L. Oliver; Miguel Verdú; Luis Delaye; Vicente Arnau; Pedro Bernaola-Galván; Rebeca de la Fuente; Wladimiro Díaz; Cristina Gómez-Martín; Francisco M. González; Amparo Latorre; Ricardo Lebrón; Ramón Román-Roldán (2020) Driven progressive evolution of genome sequence complexity in Cyanobacteria. Scientific Reports, 10 . ISSN: 2045-2322
- P. Sebastian-Leon; A. Devesa-Peiro; A. Aleman; A. Parraga-Leo; V. Arnau; A. Pellicer; P. Diaz-Gimeno (2021) Transcriptional changes through menstrual cycle reveal a global transcriptional derepression underlying the molecular mechanism involved in the window of implantation. Molecular Human Reproduction, 27(5), pp. 1 - 16 . ISSN: 1360-9947
- María Cebriá-Mendoza; Cristina Arbona; Luís Larrea; Wladimiro Díaz; Vicente Arnau; Carlos Peña; Juan Vicente Bou; Rafael Sanjuán; José M Cuevas (2021) Deep viral blood metagenomics reveals extensive anellovirus diversity in healthy humans. Scientific Reports, 11(6921), pp. 1 - 11 . ISSN: 2045-2322
- Díaz M; Quiroz-Moreno C; Jarrín-V P; Piquer-Esteban S; Monfort-Lanzas P; Rivadeneira E; Castillejo P; Arnau V; Díaz W; Sangari FJ; Molina CA (2022) Soil Bacterial Community Along an Altitudinal Gradient in the Sumaco, a Stratovolcano in the Amazon Region. Frontiers In Forests And Global Change, 5(738568), pp. 1 - 15 . ISSN: 2624-893X
- Samuel Piquer-Esteban; Susana Ruiz-Ruiz; Vicente Arnau; Wladimiro Diaz; Andrés Moya (2022) Exploring the universal healthy human gut microbiota around the World. Computational And Structural Biotechnology Journal, 20, pp. 421 - 433 . ISSN: 2001-0370
- Maria J. Olmo-Uceda; Juan C. Muñoz-Sánchez; Wilberth Lasso-Giraldo; Vicente Arnau; Wladimiro Díaz-Villanueva; Santiago F. Elena; (2022) DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data. Viruses, 14(5), pp. 1 - 18 . ISSN: 1999-4915
- Vicente Arnau; Marina Barba-Aliaga; Gaurav Singh; Javier Ferri; José García-Martínez; José E. Pérez-Ortín (2022) A feedback mechanism controls rDNA copy number evolution in yeast independently of natural selection. Plos One, 17(9), p. e0272878 . ISSN: 1932-6203
- Rebeca de la Fuente; Wladimiro Díaz-Villanueva; Vicente Arnau; Andrés Moya (2023) Genomic Signature in Evolutionary Biology: A Review. Biology-Basel, 12(322), pp. 1 - 24 . ISSN: 2079-7737
- Hafez, AI; Soriano, B.; Elsayed, AA; Futami, R.; Ceprián, R.; Ramos-Ruiz, R.; Martínez, G.; Roig, FJ; Torres-Font, MA; Naya-Catala, F.; Calduch-Giner, JA; Trilla-Fuertes, L.; Gámez-Pozo, A.; Arnau, V.; Sempere-Luna, JM; Pérez-Sánchez, J.; Gabaldón, T.; Llorens, C. (2023) Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite. Genes, 14(267), pp. 1 - 20 . ISSN: 2073-4425
- Magdalena Díaz; Pablo Monfort-Lanzas; Cristian Quiroz-Moreno; Erika Rivadeneira; Pablo Castillejo; Vicente Arnau; Wladimiro Díaz; Spiros N. Agathos; Félix J. Sangari; Pablo Jarrín-V; C. Alfonso Molina (2023) The microbiome of the ice-capped Cayambe Volcanic Complex in Ecuador. Frontiers In Microbiology, 14, p. 1154815 . ISSN: 1664-302X
- Arnau, Vicente; Díaz-Villanueva, Wladimiro; Mifsut Benet, Jorge; Villasante, Paula; Beamud, Beatriz; Mompó, Paula; Sanjuan, Rafael; González-Candelas, Fernando; Domingo-Calap, Pilar; Dzunková, Mária (2023) Inference of the life cycle of environmental phages from genomic signature distances to their hosts. Viruses, 15(5), p. 1196 . ISSN: 1999-4915
- Mária D¿unková; James J. La Clair; Tomá¿ Tyml; Devin Doud; Frederik Schulz; Samuel Piquer-Esteban; Dafne Porcel Sanchis; Andrew Osborn; David Robinson; Katherine B. Louie; Ben P. Bowen; Robert M. Bowers; Janey Lee; Vicente Arnau; Wladimiro Díaz-Villanueva; Ramunas Stepanauskas; Terrence Gosliner; Shailesh V. Date; Trent R. Northen; Jan-Fang Cheng; Michael D. Burkart & Tanja Woyke (2023) Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium. Microbiome, 11(130), pp. 1 - 24 . ISSN: 2049-2618
- Beatriz Soriano; Ahmed Ibrahem Hafez; Fernando Naya-Català; Federico Moroni; Roxana Andreea Moldovan; Socorro Toxqui-Rodríguez; María Carla Piazzon; Vicente Arnau; Carlos Llorens; Jaume Pérez-Sánchez (2023) SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach. Genes, 14(8), pp. 1 - 15 . ISSN: 2073-4425
- Joaquín Tárraga, Vicente Arnau, Héctor Martínez, Raul Moreno, Diego Cazorla, José Salavert-Torres, Ignacio Blanquer-Espert, Joaquín Dopazo and Ignacio Medina (2014) Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinformatics, 20(23), pp. 2296 - 3398 . ISSN: 1367-4803
- Juanes JM, Miguel A, Morales LJ, Pérez-Ortín JE, Arnau V (2015) A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data. Bioinformatics, 31(19), pp. 3228 - 3230 . ISSN: 1367-4803
- Joaquin Tarraga; Asunción Gallego; Vicente Arnau; Ignacio Medina; Joaquin Dopazo (2016) HPG pore: an efficient and scalable framework for nanopore sequencing data. Bmc Bioinformatics, 17(107), pp. 1 - 7 . ISSN: 1471-2105
- Antonio Fabregat; Konstantinos Sidiropoulos; Guilherme Viteri; Oscar Forner; Pablo Marin-Garcia; Vicente Arnau; Peter D'Eustachio; Lincoln Stein and Henning Hermjakob. (2017) 'Reactome pathway analysis: a highperformance in-memory approach'. Bmc Bioinformatics, 18(142), pp. 1 - 9 . ISSN: 1471-2105
- José M. Juanes; Asunción Gallego; Joaquín Tárraga; Felipe J. Chaves; Pablo Marín-Garcia; Ignacio Medina; Vicente Arnau; Joaquín Dopazo (2017) VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy. Bmc Bioinformatics, 18:421 . ISSN: 1471-2105
- Jose Manuel Martí; L.F. Arias-Giraldo; Wladimiro Díaz-Villanueva; Vicente Arnau; Antonio Rodríguez-Franco; Carlos P. Garay (2020) Metatranscriptomic dynamics after Verticillium dahliae infection and root damage in Olea europaea. Bmc Plant Biology, 20(79) . ISSN: 1471-2229
- Almudena Devesa-Peiro; Patricia Sebastian-Leon; Francisco Garcia-Garcia; Vicente Arnau; Alejandro Aleman; Antonio Pellicer; Patricia Diaz-Gimeno (2020) Uterine disorders affecting female fertility: what are the molecular functions altered in endometrium?. Fertility and Sterility, 113(6), pp. 1261 - 1274 . ISSN: 0015-0282
- Andrés Moya; José L. Oliver; Miguel Verdú; Luis Delaye; Vicente Arnau; Pedro Bernaola-Galván; Rebeca de la Fuente; Wladimiro Díaz; Cristina Gómez-Martín; Francisco M. González; Amparo Latorre; Ricardo Lebrón; Ramón Román-Roldán (2020) Driven progressive evolution of genome sequence complexity in Cyanobacteria. Scientific Reports, 10 . ISSN: 2045-2322
- P. Sebastian-Leon; A. Devesa-Peiro; A. Aleman; A. Parraga-Leo; V. Arnau; A. Pellicer; P. Diaz-Gimeno (2021) Transcriptional changes through menstrual cycle reveal a global transcriptional derepression underlying the molecular mechanism involved in the window of implantation. Molecular Human Reproduction, 27(5), pp. 1 - 16 . ISSN: 1360-9947
- María Cebriá-Mendoza; Cristina Arbona; Luís Larrea; Wladimiro Díaz; Vicente Arnau; Carlos Peña; Juan Vicente Bou; Rafael Sanjuán; José M Cuevas (2021) Deep viral blood metagenomics reveals extensive anellovirus diversity in healthy humans. Scientific Reports, 11(6921), pp. 1 - 11 . ISSN: 2045-2322
- Díaz M; Quiroz-Moreno C; Jarrín-V P; Piquer-Esteban S; Monfort-Lanzas P; Rivadeneira E; Castillejo P; Arnau V; Díaz W; Sangari FJ; Molina CA (2022) Soil Bacterial Community Along an Altitudinal Gradient in the Sumaco, a Stratovolcano in the Amazon Region. Frontiers In Forests And Global Change, 5(738568), pp. 1 - 15 . ISSN: 2624-893X
- Samuel Piquer-Esteban; Susana Ruiz-Ruiz; Vicente Arnau; Wladimiro Diaz; Andrés Moya (2022) Exploring the universal healthy human gut microbiota around the World. Computational And Structural Biotechnology Journal, 20, pp. 421 - 433 . ISSN: 2001-0370
- Maria J. Olmo-Uceda; Juan C. Muñoz-Sánchez; Wilberth Lasso-Giraldo; Vicente Arnau; Wladimiro Díaz-Villanueva; Santiago F. Elena; (2022) DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data. Viruses, 14(5), pp. 1 - 18 . ISSN: 1999-4915
- Vicente Arnau; Marina Barba-Aliaga; Gaurav Singh; Javier Ferri; José García-Martínez; José E. Pérez-Ortín (2022) A feedback mechanism controls rDNA copy number evolution in yeast independently of natural selection. Plos One, 17(9), p. e0272878 . ISSN: 1932-6203
- Rebeca de la Fuente; Wladimiro Díaz-Villanueva; Vicente Arnau; Andrés Moya (2023) Genomic Signature in Evolutionary Biology: A Review. Biology-Basel, 12(322), pp. 1 - 24 . ISSN: 2079-7737
- Hafez, AI; Soriano, B.; Elsayed, AA; Futami, R.; Ceprián, R.; Ramos-Ruiz, R.; Martínez, G.; Roig, FJ; Torres-Font, MA; Naya-Catala, F.; Calduch-Giner, JA; Trilla-Fuertes, L.; Gámez-Pozo, A.; Arnau, V.; Sempere-Luna, JM; Pérez-Sánchez, J.; Gabaldón, T.; Llorens, C. (2023) Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite. Genes, 14(267), pp. 1 - 20 . ISSN: 2073-4425
- Magdalena Díaz; Pablo Monfort-Lanzas; Cristian Quiroz-Moreno; Erika Rivadeneira; Pablo Castillejo; Vicente Arnau; Wladimiro Díaz; Spiros N. Agathos; Félix J. Sangari; Pablo Jarrín-V; C. Alfonso Molina (2023) The microbiome of the ice-capped Cayambe Volcanic Complex in Ecuador. Frontiers In Microbiology, 14, p. 1154815 . ISSN: 1664-302X
- Arnau, Vicente; Díaz-Villanueva, Wladimiro; Mifsut Benet, Jorge; Villasante, Paula; Beamud, Beatriz; Mompó, Paula; Sanjuan, Rafael; González-Candelas, Fernando; Domingo-Calap, Pilar; Dzunková, Mária (2023) Inference of the life cycle of environmental phages from genomic signature distances to their hosts. Viruses, 15(5), p. 1196 . ISSN: 1999-4915
- Mária D¿unková; James J. La Clair; Tomá¿ Tyml; Devin Doud; Frederik Schulz; Samuel Piquer-Esteban; Dafne Porcel Sanchis; Andrew Osborn; David Robinson; Katherine B. Louie; Ben P. Bowen; Robert M. Bowers; Janey Lee; Vicente Arnau; Wladimiro Díaz-Villanueva; Ramunas Stepanauskas; Terrence Gosliner; Shailesh V. Date; Trent R. Northen; Jan-Fang Cheng; Michael D. Burkart & Tanja Woyke (2023) Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium. Microbiome, 11(130), pp. 1 - 24 . ISSN: 2049-2618
- Beatriz Soriano; Ahmed Ibrahem Hafez; Fernando Naya-Català; Federico Moroni; Roxana Andreea Moldovan; Socorro Toxqui-Rodríguez; María Carla Piazzon; Vicente Arnau; Carlos Llorens; Jaume Pérez-Sánchez (2023) SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach. Genes, 14(8), pp. 1 - 15 . ISSN: 2073-4425
Currricul@'s texts
- CV summary. Degree in Physical Sciences, specializing in Electricity, Electronics and Computer Science from the University of Valencia. Doctorate in Physical Sciences in July 1993. I am Professor of Computer Architecture and Technology in the Computer Science Department of the Higher Technical School of Engineering (ETSE-UV). Since its creation in 2012 to the present, I am the director of the Master's Degree in Bioinformatics at the UV. I have taught classes in 3 subjects of this master's degree. I have been the director of 45 final master's projects (TFM), of which 2 have obtained the extraordinary prize for the best TFM of the course. I have participated in research projects on different topics: artificial vision, robotics, image processing, ophthalmology, optics and computer networks. Currently my main line of research is Bioinformatics. I have made programs for the analysis of NGS (Next Generation Sequencing) and Protein Interaction Network data. I have collaborated in the development of web applications for the analysis and visualization of bioinformatics data. I have 4 publications in Bioinformatics and 4 in BMC Bioinformatics. Since its fundation in March 2016, I have been a member of the Institute for Integrative Systems Biology (I2SysBio, UV-CSIC). I belong to the TBC, Theory, Bioinformatics and Computing research group (https://www.uv.es/tbc), where I carry out metagenomics studies applied to extremophile systems, environmental samples and also the human microbiome. I develop algorithms for the analysis of large volumes of bioinformatics data..
- CV summary. Number of research periods of 6 years recognized: 4 Number of 5-year teaching periods recognized: 7 Number of doctoral theses supervised: 5. Currently supervising 4 theses. Publications in Q1 or Q2 quartile : 28 Total publications in journals and congresses: 144 Index h (Google Scholar): 14 Patents registered: 2 End of Degree Projects directed last 9 years: 21 Final Master's Projects directed last 9 years: 35 Awards for the best TFM in the Master in Bioinformatics: 3.
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