González-Candelas,
F. 2010. Molecular Phylogenetic Analyses in Court
Trials. In: Encyclopedia of Life Sciences (ELS). John Wiley
& Sons, Ltd: Chichester. DOI: 10.1002/9780470015902.a0021575 [PDF]
González-Candelas,
F.; López-Labrador, F.X. 2010. Clinical relevance
of genetic heterogeneity in HCV. Future Virology
5(1): 33-49 [PDF]
Novais,
Â.; Comas, I.; Baquero, F.; Cantón, R.; Coque, T.M.;
Moya, A.; González-Candelas, F.; Galán,
J.C. 2010. Evolutionary Trajectories of Beta-Lactamase CTX-M-1 Cluster
Enzymes: Predicting Antibiotic Resistance. PLoS Pathogens
6(1): e1000735. doi:10.1371/journal.ppat.1000735. [Full
text] [PDF]
[Supplementary
Material]
Sánchez,
B.; Zúñiga, M.; González-Candelas, F.;
González de los Reyes-Gavilán,C.; Margolles,A.. 2010.
Bacterial and eukaryotic phosphoketolases: phylogeny, distribution
and evolution. Journal of Molecular Microbiology and Biotechnology
18: 37-51. [Abstract]
[PDF]
Coscollá,
M.; González-Candelas, F. 2009. Comparison
of clinical and environmental samples of Legionella pneumophila
at the nucleotide sequence level. Infection, Genetics and Evolution
9: 882-888. [Abstract]
[PDF]
[Supplementary
Data]
Coscollá,
M.; González-Candelas, F. 2009. Direct sequencing
of Legionella pneumophila from respiratory samples for Sequence-Based
Typing analysis. Journal of Clinical Microbiology 47(9):
2901-2905. [Abstract]
[PDF]
[Supplemental
Data]
Cuevas,
J.M.; González, M.;Torres-Puente, M.; Jiménez-Hernández,
N.; Bracho, M.A.; García-Robles, I.; González-Candelas,
F.; Moya, A. 2009.The role of positive selection in hepatitis
C virus. Infection, Genetics and Evolution 9:
882-888. [Abstract]
[PDF]
Cuevas,J.M.;
Gonzalez-Candelas,F.; Moya,A.; Sanjuan,R. 2009. The
effect of ribavirin on the mutation rate and spectrum of Hepatitis
C virus in vivo. J. Virol. 83: 5760-5764.
[Abstract]
[PDF]
[Supplemental
material]
Cuevas,
J.M.; Torres-Puente, M.; Jiménez-Hernández, N.; Bracho,
M.A.; García-Robles, I.; Carnicer, F.; Olmo, J.D.; Ortega,
E.; González-Candelas, F.; Moya, A. 2009.
Combined therapy of interferon plus ribavirin promotes multiple adaptive
solutions in hepatitis C virus. Journal of Medical Virology
81(4): 650-656. [Abstract]
[PDF]
Domingo-Calap,
P.; Sentandreu,V.; Bracho, M.A.; González-Candelas,
F.; Moya,A.; Sanjuán, R. 2009. Unequal distribution
of RT-PCR artifacts along the E1-E2 region of Hepatitis C virus. Journal
of Virological Methods 161: 136-140. [PDF]
Lourenço
Jr., V.; Moya, A.; González-Candelas, F.;
Carbone, I.; Maffia, L.A.; Mizubuti, E. 2009. Molecular diversity
and evolutionary processes of Alternaria solani in Brazil
inferred using genealogical and coalescent approaches. Phytopathology
99: 765-774.
Juárez,
P.; Comas, I.; González-Candelas, F.; Calvete,
J.J. 2008. Evolution of snake venom disintegrins by positive Darwinian
selection. Molecular Biology and Evolution 25:
2391-2407; doi:10.1093/molbev/msn179. [Abstract]
[PDF]
[Full
Text]
Bargues,
M.D.; Klisiowicz, D.R.; González-Candelas, F.;
Ramsey, J.M.; Monroy, C.; Ponce, C-; Salazar-Schettino, P.M.; Panzera,
F.; Abad-Franch, F.; Sousa, O.E.; Schofield, C.J.; Dujardin, J.P.;
Guhl, F.; Mas-Coma, S. 2008. Phylogeography and genetic variation
of Triatoma dimidiata, the main Chagas disease vector in
Central America, and its position within the genus Triatoma.
PLoS Neglected Tropical Diseases 2(5): e233.
doi:10.1371/journal.pntd.0000233.
[Full
Text] [PDF]
[Suppl.
Material]
Bracho, M.A.; Saludes, V.; Martro, E.; Bargallo, A.; González-Candelas, F.; Ausina, V. 2008. Complete genome of a European hepatitis C virus subtype 1g isolate: phylogenetic and genetic analyses. Virology Journal 5: 72.
[Abstract] [Provisional PDF]
Comas, I.; González-Candelas, F.; Zúñiga, M. 2008. Unravelling the evolutionary history of the phosphoryl-transfer chain of the phosphoenolpyruvate:phosphotransferase system by phylogenetic analyses and genome context. BMC Evolutionary Biology 8:147.
[Abstract] [PDF]
Cuevas, J. M.; Torres-Puente, M.; Jiménez-Hernández, N.; Bracho, M. A.; García-Robles, I.; Carnicer, F.; Olmo, J. D.; Ortega, E.; Moya, A.; González-Candelas, F. 2008. Refined analysis of genetic variability parameters in hepatitis C virus and the ability to predict antiviral treatment response. Journal of Viral Hepatitis. Online Early, May 12, 2008. doi:10.1111/j.1365-2893.2008.00991.x.
[Abstract] [Full Text] [PDF] [Suppl.Material]
Cuevas, J.M.; Torres-Puente, M.; Jiménez-Hernández, N.; Bracho, M.A.; García-Robles, I.; Wrobel, B.; Carnicer,F.; del Olmo, F.; Ortega,E.; Moya,A.; González-Candelas,F. (2008) Genetic variability of Hepatitis C Virus before and after combined therapy of interferon plus ri bavirin. PLoSONE 3(8): e3058. doi:10.1371/journal.pone.0003058. [Full Text] [PDF]
Sentandreu, V.; Jiménez-Hernández, N; Torres-Puente, M.; Bracho, M.A.; Valero, A.; Gosalbes, M.J.; Ortega, E.; Moya, A.; González-Candelas, F. (2008) Evidence of Recombination in Intrapatient Populations of Hepatitis C Virus. PLoS ONE 3(9): e3239. doi:10.1371/journal.pone.0003239. [Full Text] [PDF] [Supporting Information]
Torres-Puente, M.; Cuevas, J.N.; Jiménez-Hernández, N.; Bracho, M.A.; García-Robles, I.; Wróbel, B.;Carnicer, F.; del Olmo, F.; Ortega, E.; Moya, A.; González-Candelas, F. 2008. Using evolutionary tools to refine the new hypervariable region 3 within the envelope 2 protein of hepatitis C virus. Infection, Genetics and Evolution 8(1): 74-82. [PDF]
Torres-Puente, M.; Cuevas, J.N.; Jiménez-Hernández, N.; Bracho, M.A.; García-Robles, I.; Wrobel, B.; Carnicer, F.; del Olmo, F.; Ortega, E.; Moya, A.; González-Candelas, F. 2008. Genetic variability in hepatitis C virus and its role in antiviral treatment response. The Journal of Viral Hepatitis 15: 188-199. [Abstract] [PDF] [Suppl.Material]
Torres-Puente, M.; Cuevas, J.N.; Jiménez-Hernández, N.; Bracho, M.A.; García-Robles, I.; Carnicer, F.; del Olmo, F.; Ortega, E.; Moya, A.; González-Candelas, F. 2007. Hepatitis C virus and the controversial role of the interferon sensitivity determining region in the response to interferon treatment. The Journal of Medical Virology 80(2): 247-253. [Abstract] [PDF]
Jimenez-Hernandez N, Sentandreu V, Castro JA, Torres-Puente M, Bracho A, Garcia-Robles I, Ortega E, Del Olmo J, Carnicer F, Gonzalez-Candelas F, Moya A. 2008. Effect of antiviral treatment and host susceptibility on positive selection in hepatitis C virus (HCV). Virus Res. 2008 131(2): 224-232. [Abstract] [PDF]
Palop-Esteban, M.; Segarra-Moragues, J.G.; González-Candelas, F. 2007. Historical and biological determinants of genetic diversity in the highly endemic triploid sea lavender Limonium dufourii (Plumbaginaceae).
Molecular Ecology 16(18):3814-27. [PDF]
Torres-Puente, M.; Cuevas, J.M.; Jiménez-Hernéndez, N.; Bracho, M.A.; García-Robles, I.; Carnicer, F.; del Olmo, J.;Ortega, E.; Moya, A.; González-Candelas, F. 2007. Contribution of insertions and deletions to the variability of hepatitis C virus populations. Journal of General Virology 88(8):2198-2203. [PDF]
Amadoz,
A.; González-Candelas, F. 2007. epiPATH:
an information system for the storage and management of molecular
epidemiology data from infectious pathogens. BMC Infectious
Diseases 7: 32. [PDF]
Comas,
I.; Moya, A.; González-Candelas, F. 2007.
From
phylogenetics to phylogenomics: the evolutionary relationships of
insect endosymbiotic gamma-Proteobacteria as a test case. Systematic
Biology 56(1): 1-16. [PDF]
Comas,
I.; Moya, A.; González-Candelas, F. 2007.
Phylogenetic
signal and functional categories in Proteobacteria
genomes. BMC Evolutionary Biology 7 (Suppl.
1): S7 (8 February 2007) [PDF]
Garcia-Martinez, J.; González-Candelas, F.; Perez-Ortin, J. 2007. Common gene expression strategies revealed by genome-wide analysis in yeast. Genome Biology 8:R222. [Abstract] [PDF] [PubMed]
Coscollá,
M.; González-Candelas, F. 2007.
Population structure and recombination in environmental isolates of
Legionella pneumophila. Environmental Microbiology
9(3): 643-656. [PDF]
Segarra-Moragues J.G.; Palop-Esteban M.; González-Candelas F.; Catalán P. 2007. Nunatak survival vs. tabula rasa in the Central Pyrenees: a study on the endemic plant species Borderea pyrenaica (Dioscoreaceae). Journal of Biogeography 34: 1893-1906. [Abstract] [PDF]
Jiménez-Hernández,
N.; Torres-Puente, M.; Bracho, M. A.; García-Robles,
I.; Ortega, E.; del Olmo, J.;Carnicer, F. González-Candelas,
F.; Moya, A. 2007. Epidemic dynamics of two coexisting hepatitis
C virus subtypes. Journal of General Virology 88(1): 123-133.[Abstract]
[PDF]
Comas,
I.; Moya, A.; Azad, R.K.; Lawrence, J.G.; González-Candelas,
F. 2006. The Evolutionary Origin of Xanthomonadales Genomes
and the Nature of the Horizontal Gene Transfer Process. Molecular
Biology and Evolution 23(11): 2049-2057. PDF
Coscollá,
M.; Gosalbes, M.J.; Catalán, V.; González-Candelas,
F. 2006. Genetic variability in environmental isolates of
Legionella pneumophila from Comunidad Valenciana (Spain).
Environmental Microbiology 8 (6): 1056-1063.
PDF
Wróbel,
B.; Torres-Puente, M.; Jiménez, N.; Bracho, M.A.; García-Robles,
I.; Moya, A.; González-Candelas, F. 2006.
Analysis of the overdispersed clock in the short term evolution of
hepatitis C virus: using the E1/E2 gene sequences to infer infection
dates in a single source outbreak. Molecular Biology and Evolution
23(6):1242-1253. PDF
Czarna,
A.; Sanjuán, R.; González-Candelas, F.;
Wróbel, B. 2006.Topology testing of phylogenies using least
squares methods. BMC Evolutionary Biology 6:105.
PDF
Bargues,
M.D.; Klisiowicz, D.R.; Panzera, F.; Noireau, F.; Marcilla, A.; Perez,
R.; Rojas, M.G.; O’Connor, J.E.; González-Candelas,
F.; Galvão, C.; Jurberg, J.; Carcavallo, R.U.; Dujardin,
J.P.; Mas-Coma, S. 2006. Origin and phylogeography of the Chagas disease
main vector Triatoma infestans based on nuclear rDNA sequences
and genome size. Infection, Genetics and Evolution 6(1):
46-62. PDF
López-Labrador,
F.-X.; Bracho, M.A.; Berenguer, M.; Coscolla, M.; Rayón, J.M.;
Prieto, M.; Carrasco, D.; Gómez, M. D.; Moya, A.; González-Candelas,
F. 2006. Genetic similarity of hepatitis C virus and fibrosis
progression in chronic and recurrent infection after liver transplantation.
Journal of Viral Hepatitis 13: 104-115.
PDF
Bracho,
M.A.; Carrillo-Cruz, F.Y.; Ortega, E.; Moya, A.; González-Candelas,
F. 2006. A new subtype of hepatitis C virus genotype 1: complete
genome and phylogenetic relationships of an Equatorial Guinea isolate.
Journal of General Virology 87 (6): 1697-1702.
PDF
Maria
Alma Bracho, María José Gosalbes, Francisco González,
Andrés Moya and Fernando González-Candelas.
2006. Molecular epidemiology and evolution in a fulminant hepatitis
B virus outbreak. Journal of Clinical Microbiology 44(4):
1288-1294. PDF
Pilar
Catalán, José Gabriel Segarra-Moragues, Marisa Palop-Esteban,
Carlos Moreno and Fernando González-Candelas.
2006. A Bayesian approach for discriminating among alternative inheritance
hypotheses in plant polyploids: the allotetraploid origin of genus
Borderea (Dioscoreaceae). Genetics 172(3):
1939-1953. PDF
González-Candelas,
F.; Moya, A. 2005. Time and rate of evolution
are the key to establish transmission cases. AIDS 19(14):
1552-1553. PDF
Zúñiga,
M.; Comas,I.;
Linaje, R.; Monedero, V.;
Yebra, M. J.;
Esteban, C.D.;
Deutscher, J.;Pérez-Martínez,
G.; González-Candelas,
F. 2005. Horizontal Gene Transfer in the Molecular Evolution
of Mannose PTS Transporters. Molecular Biology and Evolution
22(8):1673-1685. doi:10.1093/molbev/msi156
[Abstract]
[Full
Text] [PDF]
Bracho,M.
A.; Gosalbes, M.
J.; Blasco, D.;
Moya, A.; González-Candelas,
F. 2005. Molecular Epidemiology of a Hepatitis C Virus Outbreak
in a Hemodialysis Unit. J. Clin. Microbiol. 43: 2750-2755.
[Abstract]
[Full Text]
[PDF]
Comas,
I.; Moya, A.; González-Candelas, F. 2005.
Validating viral quasispecies with digital organisms: a re-examination
of the critical mutation rate. BMC Evolutionary Biology 5:
5.
[Abstract]
[Full text]
[PDF]
[PubMed]
[Related
articles]
Segarra-Moragues,
J.G.; Palop-Esteban, M.; González-Candelas; F.
and Catalán, P.; 2005. On the verge of extinction: Genetics
of the critically endangered Iberian plant species Borderea chouardii
(Dioscoreaceae) and implications for conservation management. Molecular
Ecology 14: 969-982.
[Abstract]
[PDF] [Supplementary
Material]
Bracho,
M. A.; García-Robles, I.; Jiménez, N.; Torres-Puente,
M.; Moya, A., and González-Candelas. F. 2004.
Effect of oligonucleotide primers in determining viral variability
within hosts. Virology Journal, 1:13.
[Abstract]
[Full Text]
[PDF]
[PubMed] [Related
articles]
Segarra-Moragues,
J.G., M. Palop-Esteban, F. González-Candelas
& P. Catalán. 2004. Characterization of seven (CTT)n microsatellite
loci in the Pyrenean endemic Borderea pyrenaica (Dioscoreaceae).
Remarks on ploidy level and hybrid origin assessed through allozymes
and microsatellite analyses. Journal of Heredity 95(2):177–183.
[PubMed] [PDF]
Moya,
A., E.C. Holmes & F.González-Candelas.
2004. Population genetics and the evolutionary epidemiology of RNA
viruses. Nature Reviews in Microbiology 2: 279-288.
[PubMed][PDF]
López-Labrador,F.X.,
X.-S. He, M. Berenguer, R.C. Cheung, F. González-Candelas,
T.L. Wright y H.B. Greenberg. 2004. Genetic variability of hepatitis
C virus non-structural protein 3 and virus-specific CD8+ response
in patients with chronic hepatitis C. Journal of Medical Virology
72(4): 575-585.
[PubMed] [PDF]
Gil,
R. , F. J. Silva, E. Zientz, F. Delmotte, F. González-Candelas,
A. Latorre, C. Rausell, J. Kamerbeek, J. Gadau, B. Hölldobler,
R. C. H. J. van Ham, R. Gross & A. Moya. 2003. The genome sequence
of Blochmannia floridanus: comparative analysis of reduced
genomes. Proceedings of the National Academy of Sciences
USA 100(16): 9388-9393.
[PubMed] [PDF]
Segarra-Moragues,
J.G., M. Palop-Esteban, F. González-Candelas
& P. Catalán. 2003. Characterization of ten microsatellite
loci in the critically endangered Pyrenean yam Borderea chouardii
(Dioscoraceae). Molecular Ecology Notes 3(2): 265-267.
[PDF]
Torres-Puente,
M., M.A. Bracho , N. Jimenez , I. Garcia-Robles , A. Moya & F.
Gonzalez-Candelas. 2003. Sampling and repeatability in the
evaluation of hepatitis C virus genetic variability. Journal of
General Virology 84(9):2343-50.
[PubMed]
[PDF]
González-Candelas,
F., M.A. Bracho & A. Moya. 2003. Molecular epidemiology
and forensic genetics: application to a hepatitis C virus transmission
event in a hemodialysis unit. Journal of Infectious Diseases
187(3): 352-358.
[PubMed] [PDF]
Rodríguez,
S., M. Palop, C. Palacios & F. González-Candelas.
2003. Molecular and morphological differentiation in Limonium
dufourii (Plumbaginaceae), an endangered Mediterranean plant.
Conservation Genetics 4(3): 383-391.
[PDF]
Zúñiga,
M., G. Pérez & F. González-Candelas.
2002. Evolution of arginine deiminase (ADI) pathway genes. Molecular
Phylogenetics and Evolution 25(3): 429-444.
[PubMed] [PDF]
Marín,
I., M.A. Farés, F. González Candelas,
E. Barrio & A. Moya. 2001. Detecting changes in the functional
constraints of paralogous genes. Journal of Molecular Evolution
52(1): 17-28.
[PubMed] [PDF]
Palop,
M., Palacios, C. & F. González Candelas.
2000. Development and across species transferability of microsatellite
markers in the genus Limonium (Plumbaginaceae). Conservation
Genetics 1(2): 177-179.
[PDF]
VanHam,
R.C.H.J., F. González Candelas, F. Silva,
A. Moya & A. Latorre. 2000. Post-symbiotic plasmid acquisition
and evolution of the repA1-replicon in Buchnera aphidicola.
Proceedings National Academy Sciences USA. 97(20): 10855-10860.
[PubMed] [PDF]
Sanchis,
A., A. Latorre, F. González Candelas &
J.M. Michelena. 2000. An 18S rDNA based molecular phylogeny of Aphidiinae
(Himenoptera: Braconidae). Molecular Phylogenetics and Evolution
14 (2): 180-194.
[PubMed] [PDF]
Palacios,
C., J.A. Rosselló & F. González Candelas.
2000. Study of the evolutionary relationships among Limonium
species (Plumbaginaceae) using nuclear and cytoplasmic molecular markers.
Molecular Phylogenetics and Evolution 14(2): 232-249.
[PubMed] [PDF]
Palacios,
C., S. Kresovich & F. González Candelas.
1999. A population genetic study of the endandered plant species
Limonium dufourii based on AFLPs. Molecular Ecology 8:
645-657.
[PDF]
Palacios,
C. & F. González Candelas. 1997. Analysis
of population genetic structure and variability using RAPD markers
in the endemic and endangered Limonium dufourii (Plumbaginaceae).
Molecular Ecology 6 (12): 1107-1121.
[PubMed] [PDF]
Phippen,
W.B., S. Kresovich, F. González Candelas &
J.R. McFerson. 1997. Molecular characterization can discriminate and
partition variation among genebank holdings: a case study with phenotypically
similar accessions of Brassica oleracea L. var. capitata (cabbage)
'Golden Acre'. Theoretical and Applied Genetics 94: 227-234.
[PDF]
Brown,
S.M.; M.S. Hopkins, S.E. Mitchel, T.Y. Wang, S. Kresovich, R.R. Duncan,
M.L. Senior & F. González Candelas. 1996.
Multiple methods for the identification of polymorphic simple sequence
repeats (SSRs) in sorghum [Sorghum bicolor (L.) Moench.?. Theor.
Appl. Genet. 93: 190-198.
[PDF]
Elena,
S.F., F. González-Candelas, I.S. Novella,
E.A. Duarte, D.K. Clarke, E. Domingo, J.J. Holland & A. Moya.
1996. Evolution of fitness in experimental populations of Vesicular
Stomatitis Virus. Genetics 142: 673-679.
[PubMed] [PDF]
Galiana,
A., F. González Candelas y A. Moya. 1996.
Postmating isolation analysis in founder-flush experimental populations
of Drosophila pseudoobscura. Evolution 50 (2): 941-944.
[PDF]
González
Candelas, F., S.F. Elena y A. Moya. 1995. Approximate variance
of nucleotide divergence between two sequences when restriction fragment
data are available. Genetics 140: 1443-1446.
[PDF]
Elena,
S.F., F. González Candelas y A. Moya. 1992.
Does the VP1 gene of foot-and-mouth disease virus behave as a molecular
clock? Journal of Molecular Evolution 35: 223-229.
[PDF]
Martínez,
M.A., Carrillo, C., González Candelas, F.,
Moya, A., Domingo, E. y Sobrino, F. 1991. Fitness alteration of foot-and-mouth
disease virus mutants: measurement of the adaptability of viral quasispecies.
Journal of Virology 65(7): 3954-3957.
[PDF]
Mueller,
L.D., González Candelas, F. y Sweet, V.F.
1991. Components of density-dependent population dynamics: models
and tests with Drosophila. The American Naturalist 137(4):
457-475.
[PDF]