2024

Feješ A, BELVONČÍKOVÁ P, PORCEL SANCHIS D, Borbélyová V, Celec P, DŽUNKOVÁ M, Gardlík R. The effect of cross-sex fecal microbiota transplantation on metabolism and hormonal status in adult rats. International Journal of Molecular Sciences. 2024; 25(1):601. https://doi.org/10.3390/ijms25010601

2023

DŽUNKOVÁ M, La Clair JJ, Tyml T, Doud D, Schulz F, Samuel Piquer-Esteban S, PORCEL SANCHIS D, Osborn A, Robinson D, Louie KB, Bowen BP, Bowers RM, Lee J, Arnau V, Díaz-Villanueva W, Stepanauskas R, Gosliner T, Date SV, Northen TR, Cheng JF, Burkart MD, Woyke T (2023) Microbiome 11: 130.

Arnau V, Díaz-Villanueva W, Mifsut Benet J, Villasante P, Beamud B, Mompó P, Sanjuan R, González-Candelas F, Domingo-Calap P, DŽUNKOVÁ M (2023): Inference of the Life Cycle of Environmental Phages from Genomic Signature Distances to Their Hosts. Viruses 15: 1196.

DŽUNKOVÁ M, Moraru C, Anantharaman K. (2023): Advances in viromics: new tools, challenges, and data towards characterizing human and environmental viromes. Frontiers in Microbiolology 14: 1290062.

2022

DŽUNKOVÁ M (2022): Single-cell Genomics for Uncovering Relationships between Bacteriophages and their Hosts. In book: Genetic Diversity - Recent Advances and Applications. IntechOpen 10.5772/intechopen.108118

2021

Kim WE*, Charov K*, DŽUNKOVÁ M*, Becraft ED, Brown J, Schulz F, Woyke T, La Clair JJ, Stepanauskas R, Burkart M (2021): Synthase-selective exploration of a tunicate microbiome by activity-guided single-cell genomics. ACS Chemical Biology 16: 813-819. *- equal contribution

2020

DŽUNKOVÁ M, Moya A, Chen X, Kelly C, D’Auria G (2020): Detection of mixed-strain infections by FACS and ultra-low input genome sequencing. Gut Microbes 11: 305-309.

Jarett JJ*, DŽUNKOVÁ M*, Schulz F, Roux S, Paez-Espino D, Eloe-Fadrosh E, Jungbluth SP, Ivanova N, Spear JR, Carr SA, Trivedi CB, Corsetti FA, Johnson HA, Becraft E, Kyrpides N, Stepanauskas R, Woyke T (2020): Insights into the dynamics between viruses and their hosts in a hot spring microbial mat. ISME Journal 14: 2527-2541. *-equal contribution

DŽUNKOVÁ M, Lipták R, Vlková B, Gardlík R, Čierny M, Moya A, Celec P (2020): Salivary microbiome composition changes after bariatric surgery. Scientific Reports 10: 20086.

Chen X, Yang X, de Anda J, Huang J, Li D, Xu H, Shields KS, DŽUNKOVÁ M, Hansen J, Patel IJ, Yee EU, Golenbock DT, Grant MA, Wong GCL, Kelly CP. (2020): Clostridioides difficile toxin A remodels membranes and mediates DNA entry into cells to activate Toll-like receptor 9 signaling. Gastroenterology 159: 2181-2192.e1.

2019

DŽUNKOVÁ M; Low SJ; Daly JN, Deng L, Rinke C, Hugenholtz P (2019): Defining the human gut host–phage network through single-cell viral tagging. Nature Microbiology 4: 2192-2203.

Low SJ, DŽUNKOVÁ M, Chaumeil PA, Parks DH, Hugenholtz P (2019): Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales. Nature Microbiology 4: 1306-1315.

2018

DŽUNKOVÁ M, Martinez-Martinez D, Gardlík R, Behuliak M, Janšáková K, Jiménez N, Vázquez-Castellanos JF, Marti JM, D’Auria G, Bandara HMHN, Latorre A, Celec P, Moya A (2018): Oxidative stress in the oral cavity is driven by individual-specific bacterial communities. npj Biofilms and Microbiomes 4: 29.

DŽUNKOVÁ M (2018): Flow cytometry and direct sequencing of viruses. Methods in Molecular Biology 1838: 3-14.

2016

DŽUNKOVÁ M, Moya A, Vázquez-Castellanos JF, Artacho A, Chen X, Kelly C, D'Auria G (2016): Active and secretory IgA coated bacterial fractions elucidate dysbiosis in Clostridium difficile infection. mSphere 1: e00101.

DŽUNKOVÁ M, D'Auria G, Xu H, Huang J, Duan Y, Moya A, Kelly CP, Chen X (2016): The monoclonal antitoxin antibodies (actoxumab-bezlotoxumab) treatment facilitates normalization of the gut microbiota of mice with Clostridium difficile infection. Frontiers in Cellular and Infection Microbiology 6: 119.

2015

DŽUNKOVÁ M, D'Auria G, Moya A (2015): Direct sequencing of human gut virome fractions obtained by flow cytometry. Frontiers in Microbiology 6: 955.

Simón-Soro A, D'Auria G, Collado MC, DŽUNKOVÁ M, Culshaw S, Mira A (2015): Revealing microbial recognition by specific antibodies. BMC Microbiology 15: 132.

2014

DŽUNKOVÁ M, Garcia-Garcerà M, Martínez-Priego L, D'Auria G, Calafell F, Moya A (2014): Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate. PLoS ONE 9: e102719.

D'Auria G, DŽUNKOVÁ M, Moya A, Tomáška M, Kološta M, Kmet V (2014): Genome sequence of Lactobacillus plantarum 19L3, a strain proposed as a starter culture for Slovenská bryndza ovine cheese. Genome Announcements 2: e00292.

Novakova J, DŽUNKOVÁ M, Musilova S, Vlkova E, Kokoska L, Moya A, D’Auria G. (2014): Selective growth-inhibitory effect of 8-hydroxyquinoline towards Clostridium difficile and Bifidobacterium longum subsp. longum in co-culture analysed by flow cytometry. Journal of Medical Microbiology 63: 1663-1669.

González-Candelas F, Bracho MA, Comas I, D'Auria G, DŽUNKOVÁ M, García R, Gosalbes MJ, Isaac S, Latorre A, López-Labrador FX, Patiño Galindo JA, Palero F, Pérez-Brocal V, Pérez-Cobas AE, Sánchez-Busó L, Silva FJ, Vázquez-Castellanos JF, Moya A (2014): Molecular epidemiology studies on the immigrant population in Spain [Estudios de epidemiologíamolecular en población inmigrante en España]. Revista Espanola de Salud Publica 88: 819-828.

2013

D'Auria G, Peris-Bondia F, DŽUNKOVÁ M, Mira A, Collado MC, Latorre A, Moya A (2013): Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiota core. Scientific Reports 3: 3515.

2012

DŽUNKOVÁ M, D'Auria G, Pérez-Villarroya D, Moya A (2012): Hybrid sequencing approach applied to human fecal metagenomic clone libraries revealed clones with potential biotechnological applications. PLoS ONE 7: e47654.

Bartoš J, Vlček C, Choulet F, DŽUNKOVÁ M, Cviková K, Šafář J, Šimková H, Pačes J, Strnad H, Sourdille P, Bergès H, Cattonaro F, Feuillet C, Doležel J (2012):  Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat. BMC Plant Biology 12: 155.

2011

DŽUNKOVÁ M, Janovská D, Čepková PH, Prohasková A, Kolář M (2011): Glutelin protein fraction as a tool for clear identification of Amaranth accessions. Journal of Cereal Science 53: 198-205.