A single viral plaque was isolated and
re-plated to isolate new plaques (2).
The consensus sequence of gene NS (L
= 849, Ts = 849 ´ 3 = 2547) was obtained for the parental and
derived plaques after two amplification passages by direct sequencing of the
purified RNA: 3fs / Ts = 7.6 ´ 10-5 and c
= 5. Hence, from Equation 5, min[ms/n/c]
= 7.6 ´ 10-5 / 5 = 1.5 ´ 10-5 whereas no max[ms/n/c] can be obtained because mutation
sampling was selective. The estimated selection
correction factor using the exponential plus lethal class model with E(sv) = 0.12,
pL
= 0.3, c = 5, selective sampling, and
B » 50 as estimated in another work (1)
is a = 0.33 (Figure 1) Thus, ms/n/c = 1.5 ´ 10-5 / 0.33 = 4.5 ´ 10-5.
1. Nobusawa, E. and K. Sato. 2006. Comparison of
the mutation rates of human influenza A and B viruses. J Virol. 80:3675-3678.
2. Parvin, J. D., A. Moscona,
W. T. Pan, J. M. Leider, and P. Palese.
1986. Measurement of the mutation rates of animal viruses: influenza A virus and poliovirus type 1. J Virol. 59:377-383.