Using the within pair comparison p-values, the between-pair and the complete randomization p-values, the density and empirical cumulative distribution function of the original p-values. The between-pair and complete p-values are plotted against the corresponding orness.

evalOrness(p0, p.b, p.c, orness, row = NULL, id = NULL)

Arguments

p0

Original within pair p-values

p.b

Between-pair randomization p-values

p.c

Complete randomization p-values

orness

The orness for OWA aggregation

row

The row in the expression matrix of the gene

id

Gene identifier in rownames(p0)