doIt.Rd
Different p-values are produced for each gene set using a different statistical procedure and a randomization distribution. The p-values obtained are used to test the self-contained hypothesis of gene set diffferential expression
doIt(pval, oneRealization = FALSE, aggr = NULL, correction = "BH", gsc, foutput = "output")
pval | List where each element contains the p-values for each test and randomization distribution |
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oneRealization | One single sample to be used? |
aggr | Function to aggregate the p-values (as proposed in metap) |
correction | Function to adjust the p-values of the meta-analysis of p-values (single = FALSE) or the raw p-values (single = TRUE) |
gsc | Gene set collection |
foutput | Output file |