rowtest0.Rd
For a given expression matrix x
and a design matrix
factor y
the test
is applied. The expression
matrix probably is obtained as x = exprs(gse)
or
x = assay(se)
where gse
is a ExpressionSet
and
se
is a RangedSummarizedExperiment
.
Differently to rowtest the output is a matrix where
each row vector corresponding to the differential expression of the
corresponding row of the expression matrix.
rowtest0(x, y, test)
x | Matrix expression |
---|---|
y | Design matrix (nrow(y) == ncol(x)). First column |
test | Function with the statistical test (c(proportion.p,oddsratio.p, oddsratio.stats)) |
A data frame with columns named statistic
(statistic of the test),
rawp
(original p-values), adjp
(adjusted p-values) and
qval
(q-values)