Method implemented in DESeq2 for paired design of RNA-Seq data. The p-values are returned.

DESeq2paired(x, y)

Arguments

x

Expression matrix

y

Design matrix (nrow(y) == ncol(x)). First column y[,1] is the block and second column y[,2] is the element within the block with values 0 (control) and 1 (case)