justDo.Rd
Function to simulation study
justDo(n, N, nsig, noutlier = c(1, 1), lambda, test = proportion.p, norness = 50, nsim = 100, method = "dbinom", type = "complete", is.decreasing = FALSE, proc = c("owb", "owc", "er", "de"), do.auc = FALSE)
n | Number of pairs |
---|---|
N | Number of genes |
nsig | Number of significant genes (rows (noutlier+1):(noutlier+nsig) |
noutlier | Vector giving the number of outlier genes noutlier[1] (rows 1:noutlier[1] in the expression matrix) and number of pairs (columns 1:noutlier[2]) |
lambda | Vector with the lambda values for tami::rPairedPoisson |
test | Function comparing counts within each pair |
norness | Number of values for orness if orness == NULL |
nsim | Number of simulations |
method | Method to generate the orness values
|
type | Randomization distribution to generate random pairs |
is.decreasing | The values to be aggregated in decreasing order |
proc | Procedures to be tested: |
do.auc | Is the AUC value to be calculated? |