omicf.Rd
Different p-values are produced for each gene using randomization distribution.
omicf(x, y, test = proportion.p, orness = NULL, norness = 10, nsim = 100, method = "dbinom", type = "complete", is.decreasing = FALSE)
x | Count matrix |
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y | Vector giving the pairs of columns and the treatment (first and second column) |
test | Function comparing counts within each pair |
orness | Vector of the ornesses |
norness | Number of values for orness if orness == NULL |
nsim | Number of simulations |
method | Method to generate the orness values
|
type | Randomization distribution to generate random pairs |
is.decreasing | The values to be aggregated in decreasing order |