About

Hi! I am a Postdoctoral Researcher at the University of Valencia in Spain. Current research interests include the theoretical description of supramolecular assemblies using quantum and classical methods. I have a wide range of interests. Here are a few examples:

  • Science
    I do computer simulations such as Molecular Dynamics, Monte Carlo, Self-Consistent Field, ab initio simulations, and hybrids, creating fancy pictures.

  • Here are some information about projects to share:


  • PyStar logo Project
    I am developing an interactive simulation package. It helps to get familiar with computer simulations. It based on ESPResSo package. Stack: Python, PyQt framework.

  • Namics
    I am working on open source project. My task was implementing an separate engine (Cleng=Clamped Engine) based on established solver. In particular, it offers an alternative method for simulating polymers by using probabilities instead of Newton's laws of motion.

  • Espressomd
    All my Molecular Dynamics simulations were performed using this package.

  • Here are some information about languages that I am using:


  • PythonLanguage
    This is my primary language that I use. I have completed several projects with it. Here are a few examples: Storer, Maxwell Construction, Plotter, ...

  • RustLanguage
    I implemented a water model SPC/E from computational chemistry using this fancy language.

  • CPPLanguage
    Quite a bit on kinematics on robotics (private code).

  • STM32STM32
    I am interested in embedded development. Here are small pet IoT project one and pet project two.

  • Gopher
    I wrote something simple for fun. Currently, I am in search of something worth implementing... Do you have an idea? :)


Personal qualities

Perseverance, ambition, curiosity, diligence, outgoing person.

Publications

[2017] Alexey A. Polotsky, Alexander D. Kazakov, Tatiana M. Birshtein. Linear minority chain in a star brush: The coil-to-flower transition. Polymer.

[2019] Alexander D. Kazakov, Alexey A. Polotsky, Ekaterina B. Zhulina, Tatiana M. Birshtein, Frans A. M. Leermakers, and Oleg V. Borisov. Dendron Brushes in Polymer Medium: Interpenetration and Depletion. Macromolecules.

[2021] Alexander D. Kazakov, Varvara M. Prokacheva, Filip Uhlík, and Frans A. M. Leermakers. Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach.

[2022] Oleg V. Rud, Alexander D. Kazakov, Lucie Nová, Filip Uhlík. Polyelectrolyte Hydrogels as Draw Agents for Desalination of Solutions with Multivalent Ions.

[...] Something interesting ;)

Information

Email:
aleksandr[dot]kazakov_at_uv[dot]es
Address:
Valencia, Spain
Language:
English: B2
Spanish: Beginners
Czech: almost A2 :)
Russian: native speaker

Personal achievements:

  • [GAUK] Grant for the Research
  • [Nvidia]

Research interests:

  • Computer science
  • Computer simulations
  • Convolutional Neural Networks
  • Automatization

Fancy pictures:

Polymer chain. The idea of the hybrid CG-MF model: coarse-grained (CG) model and the Mean-Field (MF) model. Explicit segments are only at the end of the polymer chain. The rest segments are implicit.

Water molecules in CPK representation.

Schematic representation of buckminsterfullerene C60.

Skills/Experiences
Self Consistent Field
Molecular Dynamics simulations
Monte Carlo simulations
Python
C/C++
Go
LaTex
Rust
Qt
Linux
Docker
Embedded development/STM32
Arduino
Raspberry Pi
Siemens LOGO!
HTML
CSS
Bootstrap
Work Experience

2023 - Present

PostDoc

Simulation of supramolecular systems and code developing

2022 - 2023

Senior Software Developer

Support and extension of private and public code base, including kinematics and calibration.

Stack: C++, Python, Rust.

2020 - 2022

Principal Investigator

“Combination of Monte Carlo and Mean-Field methods for modeling of charged macromolecular systems in different solvent quality conditions” supported by The Grant Agency of Charles University.

Methods: novel hybrid MC-SCF representation.

2018 - 2022

Co-Researcher

“Theoretical studies of branched polyelectrolytes” supported by The Grant Agency of Charles University.

Methods: Self-Consistent Field, Molecular Dynamics, Monte Carlo, Ab initio Simulations.

2015 - 2017

Junior Researcher

Institute of Macromolecular Compounds Russian Academy of Sciences

Methods: Self-Consistent Field.

2016 - 2017

Web Developer

A web interface development within the University program “SPbU Alumni Association”.
Frameworks: Django

Education

2017 - 2023

Ph.D.
Ph.D.

Charles University in Prague

Topic: Computer modeling of polymer systems.

Supervisor: Dr. F. Uhlík .

2015 - 2017

Master's Degree
Master of Science in Physics

Saint Petersburg State University

Thesis: A molecular switch based on linear chain immersed into polymer brush made of regularly branched macromolecules.

Supervisors: prof., Dr. T. M. Birshtein, Dr. A. A. Polotsky.

2011 - 2015

Bachelor's Degree
Bachelor of Science in Physics

Saint Petersburg State University

Thesis: A theoretical study of conformational transitions in a single linear chain embedded in a polymer brush of starlike macromolecules.

Supervisors: prof., Dr. T. M. Birshtein, Dr. A. A. Polotsky.

Feel free to contact me.

Address

Valencia, Spain

Email

aleksandr.kazakov_at_uv[dot]es