About
Hi! I am a Postdoctoral Researcher at the University of Valencia in Spain. Current research interests include the theoretical description of supramolecular assemblies using quantum and classical methods. I have a wide range of interests. Here are a few examples:
-
I do computer simulations such as Molecular Dynamics, Monte Carlo, Self-Consistent Field, ab initio simulations, and hybrids, creating fancy pictures.
-
ProjectI am developing an interactive simulation package. It helps to get familiar with computer simulations. It based on ESPResSo package. Stack: Python, PyQt framework.
-
I am working on open source project. My task was implementing an separate engine (Cleng=Clamped Engine) based on established solver. In particular, it offers an alternative method for simulating polymers by using probabilities instead of Newton's laws of motion.
-
All my Molecular Dynamics simulations were performed using this package.
-
This is my primary language that I use. I have completed several projects with it. Here are a few examples: Storer, Maxwell Construction, Plotter, ...
-
I implemented a water model SPC/E from computational chemistry using this fancy language.
-
Quite a bit on kinematics on robotics (private code).
-
I am interested in embedded development. Here are small pet IoT project one and pet project two.
-
I wrote something simple for fun. Currently, I am in search of something worth implementing... Do you have an idea? :)
Here are some information about projects to share:
Here are some information about languages that I am using:
Personal qualities
Perseverance, ambition, curiosity, diligence, outgoing person.
Publications
[2017] Alexey A. Polotsky, Alexander D. Kazakov, Tatiana M. Birshtein. Linear minority chain in a star brush: The coil-to-flower transition. Polymer.
[2019] Alexander D. Kazakov, Alexey A. Polotsky, Ekaterina B. Zhulina, Tatiana M. Birshtein, Frans A. M. Leermakers, and Oleg V. Borisov. Dendron Brushes in Polymer Medium: Interpenetration and Depletion. Macromolecules.
[2021] Alexander D. Kazakov, Varvara M. Prokacheva, Filip Uhlík, and Frans A. M. Leermakers. Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach.
[2022] Oleg V. Rud, Alexander D. Kazakov, Lucie Nová, Filip Uhlík. Polyelectrolyte Hydrogels as Draw Agents for Desalination of Solutions with Multivalent Ions.
[...] Something interesting ;)
Information
Spanish: Beginners
Czech: almost A2 :)
Russian: native speaker
Personal achievements:
- [GAUK] Grant for the Research
- [Nvidia]
Research interests:
- Computer science
- Computer simulations
- Convolutional Neural Networks
- Automatization
Fancy pictures:
Polymer chain. The idea of the hybrid CG-MF model: coarse-grained (CG) model and the Mean-Field (MF) model. Explicit segments are only at the end of the polymer chain. The rest segments are implicit.
Water molecules in CPK representation.
Schematic representation of buckminsterfullerene C60.
Self Consistent Field
Molecular Dynamics simulations
Monte Carlo simulations
Python
C/C++
Go
LaTex
Rust
Qt
Linux
Docker
Embedded development/STM32
Arduino
Raspberry Pi
Siemens LOGO!
HTML
CSS
Bootstrap
2023 - Present
Simulation of supramolecular systems and code developing
2022 - 2023
Support and extension of private and public code base, including kinematics and calibration.
Stack: C++, Python, Rust.2020 - 2022
“Combination of Monte Carlo and Mean-Field methods for modeling of charged macromolecular systems in different solvent quality conditions” supported by The Grant Agency of Charles University.
Methods: novel hybrid MC-SCF representation.2018 - 2022
“Theoretical studies of branched polyelectrolytes” supported by The Grant Agency of Charles University.
Methods: Self-Consistent Field, Molecular Dynamics, Monte Carlo, Ab initio Simulations.2015 - 2017
Institute of Macromolecular Compounds Russian Academy of Sciences
Methods: Self-Consistent Field.2017 - 2023
Charles University in Prague
Topic: Computer modeling of polymer systems.
Supervisor: Dr. F. Uhlík .
2015 - 2017
Saint Petersburg State University
Thesis: A molecular switch based on linear chain immersed into polymer brush made of regularly branched macromolecules.
Supervisors: prof., Dr. T. M. Birshtein, Dr. A. A. Polotsky.
2011 - 2015
Saint Petersburg State University
Thesis: A theoretical study of conformational transitions in a single linear chain embedded in a polymer brush of starlike macromolecules.
Supervisors: prof., Dr. T. M. Birshtein, Dr. A. A. Polotsky.
Address
Valencia, Spain
aleksandr.kazakov_at_uv[dot]es