research PUBLICATIONS

 

Gonçalves C, Wisecaver JH, Oom MS, Leandro MJ, Shen XX, Peris D, Hittinger CT, Rokas A, Gonçalves P (Submitted). Evidence of loss and adaptive reacquisition of alcoholic fermentation in an early derived fructophilic yeast lineage. eLife [biorxiv]

 

Peris D,, Pérez-Torrado R, Hittinger CT, Barrio E, Querol A (2017). On the origins and industrial applications of Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids. Yeast. [Pubmed] [pdf]

 

Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, Hyma KE, Fay JC, Sato TK, Hittinger CT (2017). Hybridization and directed evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnol Biofuel 10:78 [Pubmed] [pdf] [Press]

 

Peris D, Arias A, Orlic S, Belloch C, Pérez-Través L, Querol A, Barrio E (2017). Mitochondrial introgression suggests extensive ancestral hybridization events among Saccharomyces species. Mol Phylogenet Evol 108:49-60 [Pubmed] [pdf]

 

Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A (2016). in silico Whole Genome & Analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studies. G3: Genes / Genomes / Genetics 6:3655-3670 [Pubmed] [pdf]

 

Peris D, Langdon QK, Moriarty RV, Sylvester K, Bontrager M, Charron G, Leducq JB, Landry CR, Libkind D, Hittinger CT (2016). Complex ancestries of lager-brewing hybrids were shaped by standing variation in the wild yeast Saccharomyces eubayanus. PLOS Genetics 12:e1006155 [Pubmed] [pdf] [Press]

 

McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers K, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT (2016). Genome sequence and annotation of a stress-tolerant, wild-derived strain of Saccharomyces cerevisiae used in biofuels research. G3: Genes / Genomes / Genetics 6: 1757-1766[Pubmed] [pdf]

 

Peris D, Pérez-Través L, Belloch C, Querol A (2016). Enological characterization of Spanish Saccharomyces kudriavzevii strains, one of the closest relatives to the parental strains of winemaking and brewing S. cerevisiae x S. kudriavzevii hybrids. Food Microbiol 53: 31-40 [Pubmed] [pdf]

 

Alexander WG, Peris D, Pfannenstiel BT, Opulente DA, Kuang M, Hittinger CT (2015). Efficient engineering of marker-free synthetic Saccharomyces allotetraploids. Fungal Gen and Biol 89: 10-17 [Pubmed] [pdf] [Press]

 

Baker EC, Wang B, Bellora N, Peris D, Hulfachor A, Koshalek J, Adams M, Libkind D, Hittinger C (2015). The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts. Mol Biol and Evol 32, 2818-2831 [Pubmed] [pdf] [Press] [Metrics]

 

Peris D, Sylvester K, Libkind D, Gonçalves P, Sampaio JP, Alexander WG, Hittinger CT (2014). Population structure and reticulate evolution of Saccharomyces eubayanus and its Lager-Brewing hybrids. Mol Ecol 23, 2031-2045 (Cover) [Pubmed] [pdf] [Press] [Metrics] [Data] [MTA & Patents]

 

Peris D, Lopes CA, Arias A, Barrio E (2012). Reconstruction of the Evolutionary History of Saccharomyces cerevisiae x S. kudriavzevii Hybrids based on Multilocus Sequence Analysis. PloS One 7(9):e45527 [Pubmed] [pdf] [Metrics]

 

Peris D, Lopes CA, Belloch C, Querol A, Barrio E (2012). Comparative genomics among Saccharomyces cerevisiae x Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins. BMC Genomics 13:407 [Pubmed] [pdf] [Metrics]

 

Peris D, Belloch C, Lopandić K, Álvarez-Pérez JM, Querol A, Barrio E (2012). The molecular characterization of new types of Saccharomyces cerevisiae x S. kudriavzevii hybrid yeasts unveils a high genetic diversity. Yeast 29(2):81-91 [Pubmed] [pdf] [Metrics]

 

El-Sharoud WM, Belloch C, Peris D, Querol A. (2009). Molecular identification of yeasts associated with traditional Egyptian dairy products. J Food Sci. ;74(7):M341-6. [Pubmed] [pdf] [Metrics]

 

press

Hybridization and directed evolution of diverse Saccharomyces species for cellulosic biofuel production.

Complex ancestries of lager-brewing hybrids were shaped by standing variation in the wild yeast Saccharomyces eubayanus.

 

Efficient engineering of marker-free synthetic Saccharomyces allotetraploids

 

"The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts"

"Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids"

 

 

associated data

Peris et al. 2014 Molecular Ecology

 

Input and output data: http://datadryad.org/resource/doi:10.5061/dryad.153b8

 

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