2011

• Araúz, P.A., Peris-Bondia, F., Latorre, A., Serra, L., Mestres, F. 2011. Molecular evidence to suggest the origin of a colonization: Drosophila subobscura in America. Genetica. 139:1477–1486. [PDF]
• Augustinos, A.A, Santos-Garcia, D., Dionyssopoulou, E., Moreira, M., Papapanagiotou, A., Scarvelakis, M., Doudoumis, V., Ramos, S., Aguiar, A.F., Borges, P.A., Khadem, M., Latorre, A., Tsiamis, G., Bourtzis, K. 2011. Detection and characterization of wolbachia infections in natural populations of aphids: is the hidden diversity fully unraveled?. PLoS One 6(12):e28695 [PDF]
• Belda, E., Pedrola, L., Peretó, J., Martínez-Blanch, J.F., Montagud, A., Navarro, E., Urchueguía, J., Ramón, D., Moya, A., Porcar, M. 2011. Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis. PLoS One. 6(6):e21751 [PDF]
• Belda-Ferré, P., Cabrera-Rubio, R., Moya, A., Mira, A. 2011. Mining virulence genes using metagenomics. PLoSOne 6:e24975. [PDF]
• Bernet, G.P., Muñoz-Pomer, A, Domínguez-Escribá, L., Covelli, L., Bernad, L., Ramasamy, S., Futami, R., Sempere, J.M., Moya, A., Llorens, C. 2011. LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome. Mobile Genetic Elements. 1(2):97-102.[PDF]
• Bracho, M. A., González-Candelas, F., Valero, A., Córdoba, J., Salazar, A. 2011. Enterovirus Co-infections and Onychomadesis after Hand, Foot, and Mouth Disease, Spain, 2008. Emerging Infectious Diseases 17(12): 2223-2231. [PDF]
• Charles, H., Balmand, S., Lamelas, A., Cottret, L., Pérez-Brocal, V., Burdin, B., Latorre, A., Febvay, G., Colella, S., Calevro, F., Rahbé, Y. 2011. A genomic reappraisal of symbiotic function in the Aphid/Buchnera symbiosis: reduced transporter sets and variable membrane organisations. Plos One. 6(12):e29096. [PDF]
• Christie, J.S., Picornell, A., Moya, A., Ramon, M.M., Castro, J.A. 2011. Mitochondrial DNA effects on fitness in Drosophila subobscura. Heredity (Edinb). 107(3):239-45. [PDF]
• Coscollá, M., Comas, I., González-Candelas, F. 2011. Quantifying nonvertical inheritance in the evolution of Legionella pneumophila. Molecular Biology and Evolution 28(2): 985-1001. [PDF]
• D'Auria, G., Galán, J.C., Rodríguez-Alcayna, M., Moya, A., Baquero, F., Latorre, A. 2011. Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes. J Bacteriol. 193(24):7008-9. [PDF]
• Delaye, L., González-Domenech, C.M. ,Garcillán-Barcia, M.P. ,Peretó, J., de la Cruz, F., Moya A. 2011. Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942. BMC Genomics 12;12:25. [PDF]
• Delaye, L., Moya, A. 2011. Abundance and distribution of the highly iterated palindrome 1 (HIP1) among prokaryotes. Mob Genet Elements. 1(3):159-168. [PDF]
• Durbán, A., Abellán, J.J., Jiménez-Hernández, N., Ponce, M., Ponce, J., Sala, T., D&prima;Auria, G., Latorre, A., Moya, A. 2011. Assessing gut microbial diversity from feces and rectal mucosa. Microbial Ecology 61: 123-133. [PDF]
• González-Alba, J.M., Holguín, A., García, R., García-Bujalance, S., Alonso, R., Suárez, A., Delgado, R., Cardeñoso, L., González, R., García-Bermejo, I., Portero F., de Mendoza, C., González-Candelas, F., Galán, J.C. 2011. Molecular surveillance of HIV-1 in Madrid, Spain: a phylogeographic analysis. Journal of Virology 85(20): 10755-10763. [PDF]
• González-Candelas, F., Comas, I., Martínez, J.L., Galán, J.C., Baquero, F. 2011. The evolution of antibiotic resistance. En M. Tibayrenc (Ed.) "Genetics and Evolution of Infectious Diseases". Cap. 12, pags. 305-337. Elsevier, London. ISBN 978-0-12-384890-1. [PDF]
• González-Candelas, F., López-Labrador, F. X., Bracho, M. A. 2011. Recombination in HCV. Viruses. 3(10):2006-2024 [PDF]
• González-Toril, E., Peretó, J. 2011. Autotrophy. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap.1, pags. 131-135. Springer, Heidelberg. [PDF]
• Gosalbes, M.J., Durbán, A., Pignatelli, M., Abellan, J.J., Jiménez-Hernández, N., Pérez-Cobas, A.E., Latorre, A., Moya, A. 2011. Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One. 6(3):e17447. [PDF]
• Lamelas, A., Gosalbes, M.J., Manzano-Marín, A., Peretó, J., Moya, A., Latorre, A. 2011. Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont. PLoS Genet. 7(11):e1002357. [PDF]
• Lamelas, A., Gosalbes, M.J., Moya, A., Latorre, A. 2011. New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina. Applied and Environmental Microbiology. 77(13):4446-4454. [PDF]
• López Davia, J., Hernández Bel, P., Zaragoza Ninet, V., Bracho, M. A., González-Candelas, F., Salazar, A., Gobernado, M., Febrer Bosch, I. 2011. Onychomadesis outbreak in Valencia, Spain associated with Hand, Foot, and Mouth disease caused by enteroviruses. Pediatric Dermatology 28(1): 1-5. [PDF]
• López-Madrigal, S., Latorre, A., Porcar, M., Moya, A., Gil, R. 2011. Complete Genome Sequence of "Candidatus Tremblaya princeps" Strain PCVAL, an Intriguing Translational Machine below the Living-Cell Status. J Bacteriol. 193(19):5587-8 [PDF]
• Martinez, M., Moya, A. 2011. Natural selection, creativity, and multi-level causation. Philosophy and Theory in Biology 3:e202. [PDF]
• Martró, E., Valero, A., Jordana-Lluch, E., Saludes, V., Planas, R., González-Candelas, F., Ausina, V., Bracho, M.A. 2011. Hepatitis C virus sequences from independent patients confirm the existence and transmissibility of subtype 2q, a rare subtype circulating in the metropolitan area of Barcelona. Journal of Medical Virology 83(5): 820-826. [PDF]
• Moya, A., 2011. Biología Sintética Editado por C.M. Romeo Casabona en Enciclopedia de Bioderecho y Bioética. Vol. 1, págs. 254-257. Editorial Comares. Granada. [URL]
• Moya, A., 2011. Los virus de ARN y la evolución. Cuadernos de Sostenibilidad y Patrimonio Natural 20: 27-32.[PDF]
• Moya, A., 2011. Revisión del libro de F.J. Ayala La evolución de un evolucionista. [URL]
• Neef, A., Latorre, A., Peretó, J., Silva, F.J., Pignatelli, M., Moya, A. 2011. Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities. Genome Biol Evol. 3:1437-48. [PDF]
• Palero, F., González-Candelas, F., Pascual, M. 2011. Microsatelight - Pipeline to expedite microsatellite analysis. Journal of Heredity 102: 247-249. [PDF]
• Peretó, J. 2011. Book Review: Creating life in the lab: How new discoveries in synthetic biology make a case for the Creator, by Fazale Rana. En "Reports of the National Center for Science Education". 31(6): 8.1-8.3 [PDF]
• Peretó, J. 2011. Calvin-Benson cycle. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap. 1, pags. 228-229. Springer, Heidelberg. [PDF]
• Peretó, J. 2011. Citric Acid Cycle. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap.1, pags. 314-316. Springer, Heidelberg. [PDF]
• Peretó, J. 2011. Fermentation. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap.1, pags. 583-584. Springer, Heidelberg. [PDF]
• Peretó, J. 2011. Origin and evolution of metabolisms. En "Origins and Evolution of Life: An Astrobiological Perspective". Eds. Gargaud, M, López-García, P, Martin, H. Pags. 270-287. Cambridge University Press, Cambridge, UK. ISBN 978-0521761314. [PDF]
• Pérez-Brocal, V., Gil, R., Moya, A., Latorre, A. 2011. New Insights on the Evolutionary History of Aphids and Their Primary Endosymbiont Buchnera aphidicola. Int J Evol Biol. 2011:250154. [PDF]
• Peris-Bondia, F., Latorre, A., Artacho, A., Moya, A., D'Auria, G. 2011. The active human gut microbiota differs from the total microbiota. PLoS One. 6(7)e22448. [PDF]
• Pignatelli, M., Moya, A. 2011. Evaluating the fidelity of de novo short read metagenomic assembly using simulated data. PLoS One. 6(5):e19984. [PDF]
• Porcar, M., Danchin, A., de Lorenzo, V., Dos Santos, V.A., Krasnogor, N., Rasmussen, S. and Moya, A. 2011. The ten grand challenges of synthetic life. Systems and Synthetic Biology 5:1-9. [PDF]
• Reimundo, P., Pignatelli, M., Alcaraz, L.D., D'Auria, G., Moya, A., Guijarro, J.A. 2011. Genome sequence of Lactococcus garvieae UNIUD074, isolated in Italy from a lactococcosis outbreak. J Bacteriol. 193(14):3684-5. [PDF]
• Riera, J., Moya, A. 2011. ¿Existe antagonismo entre selección natural y autoorganización? Ludus Vitalis 35:333-339.[PDF]
• Rivas, M., Becerra, A., Peretó, J., Bada, J.L., Lazcano, A. 2011. Metalloproteins and the Pyrite-based Origin of Life: A Critical Assessment. Origins of Life and Evolution of the Biospheres. 41(4):347-356. [PDF]
• Rodríguez-Sánchez, B., Alonso, M., Catalán, P., Sánchez Conde, M., González-Candelas, F., Giannella, M., Bouza, E., de Viedma, D.G. 2011. Genotyping of a nosocomial outbreak of pandemic influenza A/H1N1 2009. J Clin Virol. 52(2):129-32. [PDF]
• Roig, F., González-Candelas, F., Amaro, C. 2011. Domain organization and evolution of multifunctional autoprocessing repeats-in-toxin (MARTX) toxin in Vibrio vulnificus. Applied and Environmental Microbiology 77: 657-668. [PDF]
• Sanjuán, E., González-Candelas, F., Amaro, C. 2011. Polyphyletic origin of Vibrio vulnificus biotype 2 as revealed by sequence-based analysis. Applied and Environmental Microbiology 77: 688-695. [PDF]
• Sanjuán, R., Bordería, A.V. 2011. Interplay between RNA structure and protein evolution in HIV-1. Mol Biol Evol. 28(4):1333-8. [PDF]
• Sassera, D, Lo N, Epis S, D'Auria G, Montagna M, Comandatore F, Horner D, Peretó J, Luciano AM, Franciosi F, Ferri E, Crotti E, Bazzocchi C, Daffonchio D,Sacchi L, Moya A, Latorre A, Bandi C. 2011. Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor. Mol Biol Evol. 28(12):3285-96. [PDF]
• Vilanova, C., Hueso, Á., Palanca, C., Marco, G., Pitarch, M., Otero, E., Crespo, J., Szablowski, J., Rivera, S., Domínguez-Escribà, L., Navarro, E., Montagud, A., de Córdoba, P.F., González, A., Ariño, J., Moya, A., Urchueguía, J. and Porcar, M. 2011. Aequorin-expressing yeast emits light under electric control. Journal of Biotechnology 152(3):93-5. [PDF]
• Zúñiga, M., Gómez-Escoín, C. L., González-Candelas, F. 2011. Evolutionary history of the OmpR/IIIA family of signal transduction two component systems in Lactobacillaceae and Leuconostocaceae. BMC Evolutionary Biology 11: 34. [PDF]