Publications

2024

• Contreras-Rodríguez, O; Blasco, G; Biarnés, C; Puig, J; Arnoriaga-Rodríguez, M; Coll-Martínez, C; Gich, J; Raminó-Torrentà, L; Motger-Albertí, A; Pérez-Brocal, V; Moya, A; Radua, J; and Fernández-Real, J.M. 2024. Unraveling the gut-brain connection: the association of microbiota-linked structural brain biomarkers with behavior and mental health. Psychiatry and Clinical Neurosciences 78(6):339-346. [URL]
• Dinleyici, M; Pérez-Brocal, V; Arslanoglu, S; Aydemir, O; Sevuk Ozumut, S; Tekin, N; Vandenplas, Y; Moya, A; and Cagri Dinleyici, E. 2024. Composition of microbiota in transient and mature human milk: Significant changes in large for gestational age group. Nutrients 16:208. [URL]
• Domínguez-Santos, R; Baixeras, J; Moya, A; Latore, A; Gil, R; and García-Ferris, C. 2024. Gut microbiota is not essential for survival and development in Blattella germanica, but affects uric acid storage. Life 14:153. [URL]
• Falgueras-Cano, J; Falgueras-Cano, J.A; and Moya, A. 2024. ECA, a Python tool to study the evolution of life. Software Impacts 20:100633. [URL]
• Falgueras-Cano, J; Falgueras-Cano, J.A; and Moya, A. 2024. The influence of stochastic fluctuations on population dynamics: an in-silico approach. Ecological Modelling 490:110668. [URL]
• García-Gamboa, R; Senés-Guerrero, C; Díaz-Torres, O; Gradilla-Hernández, M.S; Moya, A; Pérez-Brocal, V; García-González, A; and González-Ávila, M. 2024. Associations netween bacterial and fungal communities in the human gut microbiota and their implications for nutritional status and body weight. Scientific Reports 14:5703. [URL]
• Moya, A; and Latorre, A. 2024. Francisco J. Ayala: testing his ideas on biological progress. Razón y fe 288:105-117. [URL]
• Moya, A; and Latorre, A. 2024. Francisco J. Ayala: investigando sus ideas sobre el progreso biológico. Razón y fe 288: 119-131. [URL]
• Piquer-Esteban, S; Arnau, V; Díaz, W; and Moya, A. 2024. OMD Curation Toolkit: A Workflow for In-House Curation of Public Omics Datasets. BMC Bioinformatics 25:184. [URL]
• Rosell-Díaz, M; Petit-Gay, A; Molas-Prat, L; Gallardo-Nuell, L; Ramió-Torrentà, L; Garre-Olmo, J; Pérez-Brocal, V; Moya, A; Jové, M; Pamplona, R; Puig, J; Ramos, R; Bäckhed, F; Mayneris-Perxachs, J; and Fernández-Real, J. 2024. Metformin-induced changes in the gut microbiome and plasma metabolome are associated with cognition in men. Metabolism 157:155941. [URL]
• Soria-Villalba, A; Pesantes, N; Jímenez-Hernández, N; Pons, J; Moya, A; and Pérez-Brocal, V. 2024. Comparison of experimental methodologies based on bulk-metagenome and virus-like particle enrichment: pros and cons for representativeness and reproducibility in the study of the fecal human virome. Microorganisms 12:162. [URL]

2023

• Arnoriaga-Rodríguez, M; Leal, Y; Mayneris-Perxachs, J; Pérez-Brocal, V; Moya, A; Ricart, M; Fernández-Balsells, M; and Fernández-Real, J.M. 2023. Gut microbiota composition and functionality are associated with REM sleep duration and continuous glucose levels. The Journal of Clinical Endocrinology and Metabolism 108:2931-2939. [URL]
• Bozan, G; Pérez-Brocal, V; Aslan, K; Kiral, E; Sevketoglu, E; Yazici, M.U.; Azapagasi, E; Kendirli, T; Emeksiz, S; Dursun, O; Yildizdas, D; Anil, A.B.; Akcay, N; Kihtir, H.S.; Havan, M; Tekerek, N.U.; Ekinci, F; Kilic, O; Moya, A; and Dinleyici, E.C. 2023. Intestinal and nasopharyngeal microbiota analysis of children with meningococcemia in Pediatric Intensive Care Unit: INMACS-PICU Study. Diagnostics. 13:1984.[URL]
• Bueno-Marí, R.; Domínguez-Santos, R.; Trelis, M.; Garrote-Sánchez, E.; Cholvi, M.; Quero de Lera, F.; Khoubbane, M.; Marcilla, A.; Gil, R.Pilot survey of Wolbachia pipientis infections in populations of Aedes albopictus in the city of València (Spain): implications for mosquito control. Rev Esp Salud Pública. 2023; 97: e202303017.[URL]
• Cazzaniga, M; Domínguez-Santos, R; Marín-Miret, J; Gil, R; Latorre, A; and García-Ferris, C. 2023. Exploring Gut Microbial Dynamics and Symbiotic Interaction in Blattella germanica Using Rifampicin. Biology. 12(7), 955. [URL]
• Creus-Martí, I; Marín-Miret, J; Moya, A; and Santonja, F.J. 2023. Evidence of the cooperative response of Blattella germanica gut microbiota to antibiotic treatment. Mathemathical Biosciences. 364:109057.[URL]
• D’Auria, G.; Hodzhev, Y; Aceves-Sánchez, M.J; Moya, A; Panaiotov, S; and Flores-Valdez, M.A. 2023. Genome sequences of BCG Pasteur ATCC 35734 and its derivative the vaccine candidate BCGΔBCG1419c. BMC Genomics 24:69.[URL]
• de la Fuente, R; Díaz-Villanueva, W; Arnau, V; and Moya, A. 2023. Genomic signature in Evolutionary Biology: A review. Biology. 12:322.[URL]
• Moya, A. 2023. Contingencia y necesidad en la evolución biológica. Paradigma Revista Universitaria de Cultura. 25:34-39.[URL]
• Pérez-Brocal, V; and A. Moya, A. 2023. El microbioma respiratorio en la salud y la enfermedad. Anales de Microbiota, Probióticos y Prebióticos. 4:93-99.[URL]
• Pérez-Brocal, V; and A. Moya, A. 2023. El viroma humano y su impacto sobre la piel. Noticias de Cosmética y Perfumería. 393:4-9.[URL]
• Pesantes, N; Barberá, A; Pérez-Rocher, B; Artacho, A; Vargas, S.L.; Moya, A; and Ruiz-Ruiz, S. 2023. Influence of mental health medication on microbiota in the elderly population in the Valencian region. Frontiers in Microbiology. 14:1094071.[URL]
• Rosell-Díaz, M; Santos-González, E; Motger-Albertí, A; Ramió-Torrentà, L; Garre-Olmo, J; Pérez-Brocal, V; Moya, A; Jovék, M; Pamplona, R; Puig, J; Ramose, R; Fernández-Real J.M; and Mayneris-Perxachs, J. 2023. Gut microbiota links to serum ferritin and cognition. Gut Microbes. 15:2290318.[URL]

2022

• Campos, M.; Semperem, J.M.; Galán, J.C.; Moya,A.; Cantón,R.; Llorens,C. and Baquero,F. 2022. Simulating the efficacy of vaccines on the epidemiological dynamics of SARS-CoV-2 in a membrane computing model. microLife 3:1-13. [URL]
• Contreras-Rodriguez, O; Arnoriaga-Rodríguez, M; Miranda-Olivos, R; Blasco, G; Biarnés, C; Puig, J; Rivera-Pinto, J; Calle, M.L; Pérez-Brocal, V; Moya, A; Coll Martinez, C; Ramió-Torrentà, L; Soriano-Mas, C and Fernández-Real, J.M. 2022. Obesity status and obesity-associated gut dysbiosis effects on hypothalamic structural covariance International. Journal of Obesity 46:30-38. [URL]
• Creus-Martí, I.; Moya, A. and Santonja, F.J. 2022. Bayesian hierarchical compositional models for analysing longitudinal abundance data from microbiome studies. Complexity. Article ID 4907527. [URL]
• Falgueras-Cano, J; Falgueras-Cano,J.A and Moya, A. 2022. Aggregated distribution as an explanation for the paradox of plankton and collective animal behavior. Biology 11:1477. [URL]
• García-Gamboa, R.; Domínguez Simi, M.A.; Gradilla-Hernández, M.S.; Bravo Madrigal, J.; Moya, A. and González-Ávila, M. 2022. Antimicrobial and antibiofilm effect of inulin-type fructans, used in synbiotic combination with Lactobacillus spp. against Candida albicans. Plant Foods for Human Nutrition 77:212-219. [URL]
• García-Gamboa, R; Domínguez-Simi, M; Gradilla-Hernández, M.S.; Bravo, J.; Moya, A.; Ruiz-Álvarez, B. and González, M. 2022. Anticandidal and antibiofilm effect of synbiotics including probiotics and inulin-type fructans. Antibiotics 11:1135. [URL]
• García-Roa, R; Domínguez-Santos, R; Pérez-Brocal, V; Moya, A; Latorre, A and Carazo, P. Kin. 2022. Kin recognition in Drosophila: rearing environment and relatedness can modulate gut microbiota and cuticular hydrocarbon odour profiles. Oikos e08755. [URL]
• Lassale, C; Fitó, M; Morales-Suárez-Varela, M; Moya, A; Gómez, SF and Schröder, H. 2022. Mediterranean diet and adiposity in children and adolescents: a systematic review. Obesity Reviews 23(S1):e13381. [URL]
• Marín-Miret, J.; González-Serrano, F.; Rosas, T.; Baixeras, J.; Latorre, A.; Pérez-Cobas, A.E. and Moya, A. 2022. Temporal variations shape gut microbiome ecology of the moth Brythis crini. Environmental Microbiology 24:3939-3953. [URL]
• Mayneris-Perxachs, J.; Arnoriaga-Rodríguez, M.; Garre-Olmo, J.; Puig, J.; Ramos, R.; Trelis, M.; Burokas, A.; Coll Martinez, C.; Zapata-Tona, C.; Pedraza, S.; Pérez-Brocal, V.; Ramió, Ll.; Ricart, W.; Moya, A.; Jové, M.; Sol, J.; Portero-Otin, M.; Pamplona, R.; Maldonado, R. and Fernández-Real, J.M 2022. Presence of Blastocystis in gut microbiota is associated with cognitive traits and decreased executive function. The ISME Journal. 16:2181-2197. [URL]
• Mayneris-Perxachs J.; Castells-Nobau A.; Arnoriaga-Rodríguez M.; Garre-Olmo J.; Puig J.; Ramos R.; Martínez-Hernán F.; Burokas A.; Coll C.; Moreno-Navarrete J.M.; Zapata-Tona C.; Pedraza S.; Pérez-Brocal V.; Ramió-Torrenta Ll.; Ricart W.; Moya A.; Martínez-García M.; Maldonado R. and Fernández-Real J.M. 2022. Caudovirales bacteriophages are associated with improved executive function and memory in flies, mice, and humans. Cell Host and Microbe 30:340-356. [URL]
• Mayneris-Perxachs, J.; Castells-Nobau, A.; Arnoriaga-Rodríguez, M.; Martin, M.; de la Vega-Correa, L.; Zapata, C.; Burokas, A.; Blasco, G.; Coll, C.; Escrichs, A.; Biarnés, C.; Moreno-Navarrete, J.; Puig J.; Garre-Olmo, J.; Ramos, R.; Pedraza, S.; Brugada, R.; Vilanova, J.C.; Serena, J.; Gich, J.; Ramió-Torrentà, Ll; Pérez-Brocal, V.; Moya, A.; Pamplona, R.; Sol, J.; Jové, M.; Ricart, W.; Portero-Otin, M.; Deco, G.; Maldonado, R. and Fernández-Real, J.M. 2022. Microbiota alterations in proline metabolism impact depression. Cell Metabolism. 34:681-701. [URL]
• Moya, A and García-Barranquero, P. 2022. Envejecimiento. Pasajes de Pensamiento Contemporáneo 65. [URL]
• Moya, A. 2022. ¿El fin de las dos culturas? Tres reflexiones. Revista de Occidente. 499_17-26. [URL]
• Moya, A. 2022. Prólogo. Editado por C. Ruiz Rejón y R. Navajas Pérez en La Genética 200 años después del nacimiento de Gregor Mendel. Vol 1, pp.13-16. Editorial de la Universidad de Granada. ISBN: 978-84-338-7045-2.[URL]
• Moya, A. 2022. The calculus of life: contingency vs. necessity. Physics of Life Reviews. 43: 271-272. [URL]
• Moya, A; Ruiz-Ruiz, S; and Pérez-Brocal, V. 2022. Impacto de los antibióticos sobre la microbiota. Editado por G. Álvarez Calatayud y F. Guarner en Microbiota, probióticos y prebióticos. pp: 113-118. Evidencia científica. Sociedad Española de Probióticos y Prebióticos y Editorial Ergón. ISBN: 978-84-18576-49-2 [URL]
• Ochoa-Sánchez, M.; Cerqueda-García, D.; Moya, A.; Ibarra-Laclette, E.; Altúzar-Molina, A.; Desgarennes, D. and Aluja, M. 2022. Bitter friends are not always toxic: the loss of acetic acid bacteria and the absence of Komagataeibacter in the gut microbiota of the polyphagous fly Anastrepha ludens could inhibit its development in Psidium guajava in contrast to A. striata and A. fraterculus that flourish in this host. Frontiers in Microbiology 13:979817. [URL]
• Piquer-Esteban, S; Ruiz-Ruiz, S; Arnau, V; Diaz, W and Moya, A. 2022. Exploring the universal healthy human gut microbiota around the World. Computational and Structural Biotechnology 20:421-433. [URL]
• Ruiz-Ruiz, S; Ponce, CA; Pesantes, N; Bustamante, R; Gatti, G; San Martin, V; Gutiérrez, M; Bórquez, P; Vargas, S.L; Magne, F; Calderón, E.J; Pérez-Brocal, V and Moya, A. 2022. A real-time PCR assay for detection low Pneumocystis jirovecii levels. Frontiers in Microbiology 12:787554. [URL]
• Smith, G; Manzano-Marín, A.; Reyes-Prieto, M.; Ribeiro-Antunes, C.S.; Ashworth, V.; Goselle, O.N.; Jan, A.A.A.; Latorre, A.; Perotti, M.A. and Braig, .H.R. 2022. Human follicular mites: Ectoparasites becoming symbionts. Molecular Biology and Evolution. 39(6) msac125. [URL]
• Solans, M; Barceló, M.A; Morales-Suarez-Varela, M; Moya, A and Saez, M. 2022. Prenatal exposure to antibiotics and risk of childhood overweight or obesity: a systematic review and meta-analysis. Obesity Reviews 23(S1):e13382. [URL]
• Standley, M; Blay, V; Beleva Guthrie, V; Kim, J; Lyman, A; Moya, A.; Karchin, R; and M. Camps. 2022. Experimental and in silico analysis of TEM β-lactamase adaptive evolution. ACS Infectious Diseases 8:2451-2463.[URL]
• Yalcin B.B. Kuskonmaz, S.S.; Pérez-Brocal, V; Uckan Cetinkaya, D; Moya, A; and Dinleyici, E.C.2022. Human mastadenovirus A Infection in a child during the course of hematopoietic stem cell transplant. Exp. Clin. Transplant. doi: 10.6002/ect.2022.0049[URL]

2021

• Aluja, M; Zamora, A; Pérez-Brocal, V; Altuzar-Molina, A; Guillén, L; Desgarennes, D; Vázquez-Rosas-Landa, M; Ibarra-Laclette, E; Alonso-Sánchez, A.G and Moya, A. 2021. Metagenomic survey of the highly polyphagous Anastrepha ludens developing in ancestral and exotic hosts reveals the lack of a stable microbiota in larvae and the strong influence of metamorphosis on adult gut microbiota. Frontiers in Microbiology 12:685937. [URL]
• Arnoriaga-Rodríguez, M; Mayneris, J; Coll, C; Pérez-Brocal, V; Ricart, W; Moya, A; Ramió-Torrentà, Ll; Pamplona, R; Jové, M; Portero-Otón, M and Fernández-Real, J.M. 2021. Subjects with detectable Saccharomyces cerevisiae in the gut microbiota show deficits in attention and executive function. Journal of Internal Medicine 290:740-743.[URL]
• Arnoriaga-Rodríguez, A; Mayneris-Perxachs, J; Contreras-Rodríguez, O; Burokas, A; Ortega-Sánchez, JA; Blasco, G; Coll, C; Biarnés, C; Castells-Nobau, A; Puig, J; Garre-Olmo, J; Ramos, R; Pedraza, S; Brugada, R; Vilanova, JC; Serena, J; Barretina, J; Gich, J; Pérez-Brocal, V; Moya, A; Fernández-Real, X; Ramio-Torrentà, L; Pamplona, R; Sol, J; Jové, M; Ricart, W; Portero-Otín, M; Maldonado, R; and Fernández-Real, JM. 2021. Obesity-associated deficits in inhibitory control are phenocopied to mice through gut microbiota changes in one-carbon and aromatic amino acids metabolic pathways. Gut. [URL]
• Becraft, E.D and Moya, A. 2021. Searching for the boundaries of microbial speciation in a rapidly evolving world. Frontiers in Microbiology 12:808595. [URL]
• Blay, V; Dong, J and Moya, A. 2021. Machine-learning study of the molecular drivers of natural product prices. Biofuels, Bioproducts and Biorefining 15:1820-1834. [URL]
• Campos, M; Sempere, J.M; Galán,J.C; Moya, A; Llorens, C; de los Angeles, C; Baquero-Artigao, F; Cantón, R and Baquero, F. 2021. Simulating the impact of non-pharmaceutical interventions limiting transmission in COVID-19 epidemics using a membrane computing model. μLife. 2: uqab011. [URL]
• Creus-Martí I; Moya, A and Santonja, F.J. 2021. A Dirichlet autoregressive model for the analysis of microbiota time series data. Complexity Article ID 9951817. [URL]
• Debesa-Tur, G; Pérez-Brocal, V; Ruiz-Ruiz, S; Castillejo, A; Latorre, A; Soto, JL; and Moya, A. 2021. Metagenomic analysis of formalin‑fixed paraffin‑embedded tumor and normal mucosa reveals differences in the microbiome of colorectal cancer patients. Scientific Reports 11:391.[URL]
• Dinleyici, M; Pérez-Brocal, V; Arslanoglu, S; Aydemir, O; Sevuk Ozumut, S; Tekin, N; Vandenplas, Y; Moya, A and Cagri Dinleyici, E. 2021. Human milk virome analysis: Changing pattern regarding mode of delivery, birth weight, and lactational stage. Nutrients 13:1779. [URL]
• Domínguez-Santos, R; Pérez-Cobas, A.E; Cuti, P; Pérez Brocal, V; García-Ferris, C; Moya, A; Latorre, A and Gil, R. 2021. Inter-kingdom gut microbiome and resistome of the cockroach Blattella germanica. mSystems 6:e01213-20. [URL]
• García-Gamboa, R; Kirchmayr, M.R; Gradilla-Hernández, M.S; Pérez-Brocal, V; Moya, A and González-Ávila, M. 2021. The intestinal mycobiota and its relationship with overweight, obesity and nutritional aspects. Journal of Human Nutrition and Dietetics 34:645-665. [URL]
• Mayneris-Perxachs, J; Cardellini, M; Hoyles, L; Latorre, J; Davato, F; Moreno-Navarrete, J.M; Arnoriaga-Rodríguez, M; Serino, M; Abbott, J; Barton, R.H; Puig, J; Fernandez-Real, X; Ricart, W; Tomlinson, C; Woodbridge, M; Gentileschi, P; Butcher, S; Holmes, E; Nicholson, J.K; Pérez-Brocal, V; Moya, A; Mc Clain, D; Burcelin, R; Dumas, M.E; Federici, M and Fernández-Real, J.M. 2021. Iron status influences non-alcoholic fatty liver disease in obesity through the gut microbiome. Microbiome. 9:104. [URL]
• Moreno-Arronés, O.M; Ortega-Quijano, D; Pérez-Brocal, V; Fernández-Nieto, D; Jiménez, N; de las Heras, E; Moya, A and Pérez-García, B. 2021. Dysbiotic gut microbiota in inflammatory rosacea patients: another clue towards the existence of a brain-gut-skin axis British Journal of Dermatology 185: 655-657. 2021. [URL]
• Muñoz-Benavent, M; Latorre, A; Alemany-Cosme, E; Marín-Miret, J; Domínguez-Santos, R; Silva, F.J; Gil, R and García-Ferris, C. 2021. Gut Microbiota Cannot Compensate the Impact of (quasi) Aposymbiosis in Blattella germanica. Biology (Basel). 10(10):1013. [URL]
• Muñoz-Benavent, M; Pérez-Cobas, AE; García-Ferris, C; Moya, A; and Latorre, A. 2021. Insects’ potential: understanding the functional role of their gut microbiome. Journal of Pharmaceutical and Biomedical Analysis 194:113787.[URL]
• Parisot, N; Vargas-Chávez, C; Goubert, C; Baa-Puyoulet, P; Balmand, S; Beranger, L; Blanc, C; Bonnamour, A ;Boulesteix, M; Burlet, N; Calevro, F; Callaerts, P; Chancy, T; Charles, H; Colella, S; Da Silva Barbosa, A; Dell’Aglio, E; Di Genova, A; Febvay, G; Gabaldón, T; Galvao Ferrarini, M; Gerber, A; Gillet, B; Hubley, R; Hughes, S; Jacquin-Joly, E; Maire, J; Marcet-Houben, M; Masson, F; Meslin, C; Montagne, N; Moya, A; Ribeiro de Vasconcelos, A.T; Gautier, R; Rosen, J; Sagot. M.F; Smit, A.F.A; Storer, J.M; Vincent-Monegat, V; Vallier, A; Vigneron, A; Zaidman-Remy, A; Zamoum, W; Vieira, C; Rebollo, R; Latorre, A and Heddi, A. 2021. The transposable element-rich genome of the cereal pest Sitophilus oryzae. BMC Biology 19:241. [URL]
• Reyes-Prieto, M; Gil, R; Llabrés, M; Palmer-Rodríguez, P; and Moya, A. 2021. The metabolic building blocks of a minimal cell. Biology 10:5.[URL]
• Rodríguez-Peña, M-M; Astiarraga, B; Seco, J; Ceperuelo-Mallafré, V; Caballé, A; Pérez-Brocal, V; Stephan-Otto Attolini, C; Moya,A; Llauradó, G; Megía, A; Pellitero, S; Vilarrasa, N; Fernández-Veledo, S and Vendrell, J. 2021. Changes in glucagon-like peptide 1 and 2 levels in people with obesity after a diet-induced weight-loss intervention are related to a specific microbiota signature. A prospective cohort study. Clinical and Translational Medicine 11(11):e575. [URL]
• Ruiz-Ruiz, S; Pérez-Brocal, V and Moya, A. 2021. Integración de técnicas ómicas en el estudio de la microbiota intestinal. Edit. by Abelardo Margollés Barrios in Técnicas ómicas aplicadas al estudio de la microbiota. Chapter 6, 107-117. Amazing Books. [URL]
• Sánchez-Carrillo, S; Ciordia, S; Rojo, D; Zubeldia-Varela, E; Méndez-García, C; Martínez-Martínez, M; Barbas, C; Ruiz-Ruiz, S; Moya, A; Garriga, M; Salazar, N; Botella-Carretero, J; Vega-Piñero, B; de los Reyes Gavilán, CG; del Campo, R; and Ferrer, M. 2021. A body weight loss- and health-promoting gut microbiota is established after bariatric surgery in individuals with severe obesity. Journal of Pharmaceutical and Biomedical Analysis 193:113747.[URL]
• Sanz, Y; López-Atalaya, J.P; Agustí, A; Fontecha, J; Medina, I; Moreno-Arribas, M.V; Arévalo, M.A; Trejo, J.L; Grande, I; Vieta, E; Pollán, M; Moya, A; Baquero, F and Femenía, T. 2021. Body-brain-microbiome interaction. Edit by E. Herrera and J.A. Esteban in Vol. 5: Brain, Mind and Behaviour. CSIC Scientific Challenges: Towards 2030. 74-86. Ed. CSIC. Madrid. [URL]
• Serrano-Villar, S; Talavera-Rodríguez, A; Gosalbes, MJ; Madrid, N; Pérez-Molina, JA; Elliott, RJ; Navia, B; Lanza, VF; Vallejo, A; Osman, M; Dronda, F; Budree, S; Zamora, J; Gutiérrez, C; Manzano, M; Vivancos, MJ; Ron, R; Martínez-Sanz, J; Herrera, S; Ansa, U; Moya, A; and Moreno, S. 2021. Fecal microbiota transplantation in HIV: A pilot placebo-controlled study. A prospective cohort study. Nature Communications 12:1139.[URL]
• Solana, J; Garrote-Sánchez, E and Gil, R. 2021. DELEAT: gene essentiality prediction and deletion design for bacterial genome reduction. BMC Bioinformatics. 22(1):444. [URL]
• Stamilla, A; Ruiz-Ruiz, S; Artacho, A; Pons, J; Messina, A; Randazzo, C.L; Caggia, C; Lanza, M and Moya, A. 2021. Analysis of the microbial intestinal tract in broiler chickens during the rearing period. Biology Basel 10:942. [URL]

2020

• Allaw, M; Manca, ML; Caddeo, C; Recio, MC; Pérez-Brocal, V; Moya, A; Fernández-Busquets, X and Manconi, M. 2020. Advanced strategy to exploit wine-making waste by manufacturing antioxidant and prebiotic fibre-enriched vesicles for intestinal health. Colloids and Surfaces B: Biointerfaces V193.[URL]
• Arnoriaga-Rodríguez, M; Mayneris-Perxachs, J; Burokas, A; Pérez-Brocal, V; Moya, A; Portero-Otin, M; Ricart, W; Maldonado, R; and Fernández-Real, J.M. 2020. Gut bacterial ClpB-like gene function is associated with decreased body weight and a characteristic microbiota profile. Microbiome 8:59.[PDF]
• Arnoriaga-Rodríguez, M; Mayneris-Perxachs, J; Burokas, A; Contreras-Rodríguez, O; Blasco, G; Coll, C; Biarnés, C; Miranda-Olivos, R; Latorre, J; Moreno-Navarrete, JM; Castells-Nobau, A; Sabater, M; Palomo-Buitrago, ME; Puig, J; Pedraza, S; Gich, J; Pérez-Brocal, V; Ricart, W; Moya, A; Fernández-Real, X; Ramió-Torrentà, L; Pamplona, R; Sol, J; Jové, M; Portero-Otin, M; Maldonado, R; and Fernández-Real, JM. 2020. Obesity impairs short-term and working memory through gut microbial metabolism of aromatic amino acids. Cell Metabolism 32:548-560.[URL]
• Delaye, L; Vargas, C; Latorre, A; and Moya, A. 2020. Inferring horizontal gene transfer with DarkHorse, Phylomizer, and ETE toolkits. Edit. By Fernando de la Cruz in Horizontal Gene Transfer: Methods and Protocols, Methods in Mol. Biol.2075:355-369.[URL]
• Dinleyici, M; Pérez-Brocal, V; Arslanoglu, S; Aydemir, O; Ozumut, S.S; Tekin, N; Vandenplas, Y; Moya, A and Dinleyici, E.C. 2020. Human milk mycobiota composition: relationship with gestational age, delivery mode, and birth weight. Beneficial Microbes.28:1-12. [URL]
• Domínguez-Santos, R; Pérez-Cobas, A.E; Artacho, A; Castro, J.A; Talón, I; Moya, A; García-Ferris, C and Latorre, A. 2020. Unraveling assemblage, functions and stability of the gut microbiota of Blattella germanica by antibiotic treatment. Frontiers in Microbiology 11:487.[PDF]
• Džunková, M; Moya, A; Chen, X; Kelly, C and D’Auria, G. 2020. Detection of mixed-strain infections by FACS and ultra-low input genome sequencing. Gut Microbes 11:305-309.[URL]
• Džunková, M; Liptak, R; Vlková, B; Gardlík, R; Cierny, M; Moya, A; and Celec, P. 2020. Salivary microbiome composition changes after bariatric surgery. Scientific Reports 10:20086.[URL]
• Gaona, O; Cerqueda-García, D; Moya, A; Neri-Barrios, C and Falcón, L. 2020. Geographical separation and physiology drive differentiation of microbial communities in two discrete populations of the bat Leptonycteris yerbabuenae. Microbiology Open 9:e1022.[URL]
• González-Serrano, F; Pérez-Cobas, A.E.; Rosas, T; Baixeras, J; Latorre, A and Moya, A. 2020. The gut microbiota composition of the moth Brithys crini reflects insect metamorphosis. Microbial Ecology 79:960-970.[URL]
• Ibarra-Juarez, L; Burton, M; Biedermann, P; Cruz, L; Desgarennes, D; Ibarra-Laclette, E; Latorre, A; Alonso-Sánchez, A; Villafán, E; Hanako-Rosas, G; López, L; Vázquez-Rosas-Landa, M; Carrion, G; Carrillos, D; Moya, A and Lamelas-Cabello, A. 2020. Evidence for succession and putative metabolic roles of fungi and bacteria in the farming mutualism of the ambrosia beetle Xyleborus affinis. mSystems 5(5):e00541-20. [URL]
• Lamelas, A; Desgarennes, D; López-Lima, D; Villain, L; Alonso-Sánchez, A; Artacho, A; Latorre, A; Moya, A and Carrión, G. 2020. The bacterial microbiome of Meloidogyne-based disease complex in coffee and tomato. Frontiers in Plant Science 11:136. [PDF]
• Mayneris-Perxachs, J; Arnoriaga-Rodríguez, M; Luque-Córdoba, D; Priego-Capote, F; Pérez-Brocal, V; Moya, A; Burokas, A; Maldonado, R and Fernández-Real, JM. 2020. Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status. Microbiome 8, 136. [URL]
• Méndez-Pérez, R; García-López, R; Bautista-López, JS; Vázquez-Castellanos, J; Álvarez-González, C; Peña-Marín, E; Baltierra-Trejo, E; Adams-Schroeder, R; Domínguez-Rodríguez, V; Melgar-Valdés, C; Martínez-García, R; Moya, A and Gómez-Cruz, R. 2020. High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus). Latin American Journal of Aquatic Research 48:456-479. [URL]
• Moreno-Arrones, OM; Serrano-Villar, S; Pérez-Brocal, V; Saceda-Corrado, D; Morales-Raya, C; Rodrigues-Barata, R; Moya, A; Jaén-Olasolo, P; and Vano-Galván, S. 2020. Analysis of the gut microbiota in alopecia areata: identification of bacterial biomarkers. Journal of the European Academy of Dermatology and Venereology 34(2):400-405.[URL]
• Moya, A. 2020. Progreso, complejidad y evolución. Endoxa 46: 427-440. [URL]
• Moya, A. 2020. Sobre humanos y microbios. Revista de Occidente 475: 10-19. [URL]
• Moya, A. 2020. Epidemia y desigualdad. Ludus Vitalis 28: 143-146. [PDF]
• Moya, A. 2020. Ciencia en pequeñas dosis. Reflexiones sobre ciencia y evolución. Ediciones Cálamo. [URL]
• Moya, A; Ruiz-Ruiz, S and Ferrer, M. 2020. Bacterial taxa decoupling with ageing. Aging-US 12(16): 15878-15879. [URL]
• Moya, A; Oliver, JL; Verdú, M; Delaye, L; Arnau, V; Bernaola-Galván, P; de la Fuente, R; Díaz, W; Gómez-Martín, C; González, FM; Latorre, A; Lebrón, R; and Román-Roldán, R. 2020. Driven progressive evolution of genome sequence complexity in Cyanobacteria. Scientific Reports 10:19073. [URL]
• Muñoz-Benavent, M; Hartkopf, F; Van Den Bossche, T; Piro, VC; García-Ferris, C; Latorre, A; Renard, BY; and Muth, T. 2020. gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms. NAR Genomics and Bioinformatics 2(3):lqaa058. [URL]
• Pérez-Brocal, V; Magne, F; Ruiz-Ruiz, S; Ponce, CA; Bustamante, R; San Martín, V; Gutiérrez, M; Gatti, G; Vargas, SL and Moya, A. 2020. Optimized DNA extraction and purification method for characterization of bacterial and fungal communities in lung tissue samples. Scientific Reports. [PDF]
• Reyes-Prieto, M; Vargas-Chávez, C; Llabrés, M; Palmer, P; Latorre, A and Moya, A. 2020. An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms Database. doi:10.1093/database/baz160.[PDF]
• Ruiz-Ruiz, S; Pérez-Brocal, V; and Moya, A. 2020. Integración de técnica ómicas en el estudio de la microbiota intestinal. Edit By Abelardo Margolles Barrios in Técnicas ómicas aplicadas al estudio de la microbiota. Chapter 6. Amazin Books Editorial.[URL]
• Sainz, T; Gosalbes, MJ; Talavera, A; Jiménez-Hernández, N; Prieto, L; Escosa, L; Guillén, S; Ramos, JT, Muñoz-Fernández, MA; Moya, A; Navarro, ML; Mellado, MJ and Serrano-Villar, S. 2020. Effect of a nutritional intervention on the intestinal microbiota of vertically HIV-infected children: the Pediabiota study. Nutrients 12:2112.[URL]
• Silva, FJ; Muñoz-Benavent, M; García-Ferris, C; and Latorre, A. 2020. Blattella germanica displays a large arsenal of antimicrobial peptide genes. Sci Rep 10, 21058.[URL]
• Yasar-Bilge, N; Pérez-Brocal, V; Kasifoglu, T; Bilge, U; Kasifoglu, N; Moya, A; and Dinleyici, E. 2020. Intestinal microbiota composition of patients with Behçet's disease: differences between eye, mucocutaneous, and vascular involvement - The Rheuma-Biota study. Clinical and Experimental Rheumatology 79:1543-1544.[URL]

2019

• Aluja, M; Guillén, L; Ochoa, M; Pascacio-Villafán, C; Birke, A; Altúzar-Molina, A; Lamelas, A; Pérez-Brocal, V; Latorre, A; and Moya, A. 2019. La reivindicación de las bacterias. Ciencia y Desarrollo No. 299:2019.[URL]
• Amaretti, A; Gozzoli, C; Simone, M; Righini, L; Raimondi, S; Pérez-Brocal, V; García-López, R; Moya, A; and Rossi, M. 2019. Profiling of protein degraders in cultures of human gut microbiota. Frontiers in Microbiology 10:2614.[URL]
• Ata, B; Yildiz, S; Turkgerdi, E; Pérez-Brocal, V; Dinleyici, E; Moya, A; and Urman, B.2019. The Endobiota study: comparison of vaginal, cervical and gut microbiota between women with stage 3-4 endometriosis and healthy controls. Scientific Reports 9(2204).[PDF]
• Campos, M; Capilla, R; Naya, F; Futami, R; Coque, T; Moya, A; Fernández-Lanza, V; Cantón, R; Sempere, JM; Llorens, C; and Baquero, F. 2019. Simulating multi-level dynamics of antimicrobial resistance in a membrane computing model. mBIO 10:e02460-18.[PDF]
• García-López, R; Pérez-Brocal, V; and Moya, A. 2019. Beyond cells - The virome in the human holobiont. Microbial Cell. 6(9):373-396.[URL]
• Gil, R; and Latorre, A. 2019. Unity makes strength: a review on mutualistic symbiosis in representative insect clades. Life 9(1).[PDF]
• Jiménez-Hernández, N; Serrano-Villar, S; Domingo, A; Pons, X; Artacho, A; Estrada, V; Moya, A; and Gosalbes, MJ. 2019. Modulation of Saliva Microbiota through Prebiotics Intervention in HIV-Infected Individuals. Nutrients. 11(6):1346.[URL]
• Julca, I; Marcet-Houben, M; Cruz, F; Vargas-Chavez, C; Johnston, JS; Gómez-Garrido, J; Frias, L; Corvelo,A; Losk, D; Cámara, F; Gut, M; Alioto, T; Latorre, A and Gabaldón, T. 2019. Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha. Molecular Biology and Evolution 37(3):msz26. [URL]
• Llop, P; Latorre, A; and Moya, A. 2019. Experimental epidemiology of antibiotic resistance: looking for an appropriate animal model system. Edit by Baquero, F; Bouza, E; Gutierrez-Fuentes, JA; and Coque, T in Microbial Transmission, pp. 291-309. ASM Press.[URL]
• Medina, DA; Li, P; Thomson, P; Artacho, A; Pérez-Brocal, V; and Moya, A. 2019. Cross-regional view of functional and taxonomic microbiota composition in obesity and post-obesity treatment shows country specific microbial contribution. Frontiers in Microbiology 10:2346.[URL]
• Moreira, M; Aguilar, AMF; Bourtzis, K; Latorre, A; and Khadem, M. 2019. Wolbachia (Alphaproteobacteria: Rickettsiales) Infections in Isolated Aphid Populations from Oceanic Islands of the Azores Archipelago: Revisiting the Supergroups M and N. Environmental Entomolgy 48:326-334.[URL]
• Moya, A. La filosofía no ha muerto: Hawking filosofa con la ciencia que dispone en su tiempo. Ludus Vitalis 27: 185-190.[PDF]
• Moya, A. El desafío posthumanista. Revisión del libro Homo Deus. Breve historia del mañana de Yuval Noah Harari. Pasajes de Pensamiento Contemporáneo 57: 125-130.[URL]
• Moya, A and Diéguez, A. Transhumanismo. Pasajes de Pensamiento Contemporáneo 57: 2-4.[URL]
• Palomo-Buitrago, ME; Sabater-Masdeu, M; Moreno-Navarrete, JM; Caballano-Infactes, E; Arnoriaga-Rodríguez, M; Coll, C; Ramio, Ll; Palomino-Schätzlein, M; Gutiérrez-Carcedo, P; Pérez-Brocal, V; Moya, A; Simó, R; Ricart, W; Herance, JR; and Fernández-Real, JM. 2019. Glutamate interactions with obesity, insulin resistance, cognition and gut microbiota composition. Acta Diabetologica 56(5):569-579.[PDF]
• Raimondi, S; Luciani, R; Sirangelo, R; Amaretti, A; Leonardi, A; Ulrici, A; Foca, G; D'Auria, G; Moya, A; Zuliani, V; Martin-Seibert, T; Soeltoft-Jensen, J; and Rossi, M. 2019. Microbiota of sliced cooked ham packaged in modified atmosphere throughout the shelf life. International Journal of Food Microbiology 289:200-209.[PDF]
• Ruiz-Ruiz, S; Sanchez-Carrillo, S; Ciordia, S; Mena, MC; Méndez-García, C; Rojo, D; Bargiela, R; Zubeldia-Varela, E; Martínez-Martínez, M; Barbas, C; Ferrer, M; and Moya, A. 2019. Functional microbiome deficits associated with ageing: chronological age-threshold. Aging Cell. 10.111/acel.13063.[URL]
• Serrano-Villar, S; de Lagarde, M; Vázquez-Castellanos, J; Vallejo, A; Bernardino, JI; Madrid, N; Matarranz, M; Díaz-Santiago, A; Gutiérrez, C; Cabello, A; Villar-García, J; Blanco, J; Bisba, O; Sainz, R; Moya, A; Moreno, S; Gosalbes, MJ; and Estrada, V. Effects of immunonutrition in advanced HIV disease: a randomized placebo controlled clinical trial (Promaltia study). Clinical Infectious Diseases 68:120-130.[PDF]

2018

• Ballesteros, FJ; Martínez, VJ; Luque, B; Lacasa, L; Valor, E; and Moya, A. 2018. On the thermodynamic origin of metabolic scaling.Scientific Reports 8:1448.[PDF]
• Delaye, L; Ruiz-Ruiz, S; Calderon, E; Tarazona, S; Conesa, A; and Moya, A. 2018. Evidence of the Red-Queen hypothesis from accelerated rates of evolution of genes involved in biotic interactions in Pneumocystis. Genome Biology and Evolution 10:1596-1606.[PDF]
• Deusch, S;Serrano-Villar, S; Rojo, D; Martínez-Martínez, M; Bargiela, R; Vázquez-Castellanos, JF; Sainz, T; Barbas, C; Moya, A; Moreno, S; Gosalbes, MJ; Estrada, V; Seifert, J; Ferrer, M. 2018.Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota.AIDS 32(10):1229-1237.[URL]
• Dinleyici, EC; Martinez Martinez, D; Kara, A; Karbuz, A; Dalgic, N; Metin, O; Yazar, AS; Guven, S; Kurugol, Z; Turel, O; Kucukkoc, M; Yasa, O; Eren, M; Ozen, M; Marti, JM; Garay, CP; Vandenplas, Y; Moya, A. 2018. Time series analysis of the microbiota of children suffering from acute infectious diarrhea and their recovery after treatment.Frontiers in Microbiology 9:1230.[PDF]
• Džunková, M; Martínez-Martínez, D; Gardlík, R; Behuliak, M; Janšáková, K; Jiménez, N; Vázquez-Castellanos, JF; Martí, JM; D'Auria, G; Bandara, HMHN; Latorre, A; Celec, P; and Moya, A. 2018. Oxidative stress in the oral cavity is driven by individual specific bacterial communities. NPJ Biofilms and Microbiomes 4:29.[PDF]
• Džunková, M; Moya, A; Chen, X; Kelly, C; and D'Auria, G. 2018. Detection of mixed-strain infections by FACS and ultra-low input genome sequencing. Gut Microbes 5:1-5.[URL]
• Garcia-Nuñez, M; Gallego, M; Monton, C; Capilla, S; Millares, L; Pomares, X; Espasa, M; Ferrari, R; Moya, A; Monsó, E; Pérez-Brocal, V. 2018. The respiratory virome in chronic obstructive pulmonary disease.Future Virology 13(7): 457–466. [URL]
• Gil, R; Vargas-Chavez, C; López-Madrigal, S; Santos-García, D; Latorre, A; Moya, A. 2018.Tremblaya phenacola PPER: An evolutionary beta-gammaproteobacterium collage.The ISME Journal 12:124-135.[URL]
• Gil, R; Latorre, A; and Moya, A. 2018. Evolution of prokaryote-animal symbiosis from a genomics perspective. Edit by J.H.P. Hackstein in (Endo)symbiotic Methanogenic Archaea. Second edition. Microbiology Monographs. 19:223-255. Springer-Verlag. Berlin.[URL]
• Ibarra-Juarez, LA; Desgarennes, D; Vázquez-Rosas-Landa, M; Villafan, E; Alonso-Sánchez, A; Ferrera-Rodríguez, O; Moya, A; Carrillo, D; Cruz, L; Carrión, G; López-Buenfil, A; García-Avila, C; Ibarra-Laclette, E; and Lamelas, A. 2018. Impact of rearing conditions on the Ambrosia beetle's microbiome. Life 8:63.[PDF]
• Llop, P; Latorre, A; Moya, A. 2018.Experimental epidemiology of antibiotic resistance: looking for an appropriate animal model system. Microbiology Spectrum 6(1): MTBP-0007-2016.[URL]
• Martínez-Cano, DJ; Bor, G; Moya, A; Delaye, L. 2018.Testing the domino theory of gene loss in Buchnera aphidicola: the relevance of epistatic interactions.Life. 8:17.[PDF]
• Moya, A. 2018. La ciencia y el arte desde la perspectiva de la transevolución. Arbor 194(790).[URL]
• Moya, A; and 62 additional authors. 2018. Harassment charges: injustice done? Science 361:655-656.[PDF]
• Moya, A; and Pérez-Brocal, V (eds.). 2018. The human virome. Methods and Protocols. Springer, New York.[URL]
• Pérez-Brocal, V; Andremont, A; Moya, A. 2018. Isolation in small populations of Wayampi Amerindians promotes endemicity and homogenisation of their faecal virome, but its distribution is not entirely random.FEMS Microbiology Ecology 94:fix184.[URL]
• Pérez-Brocal, V; Moya, A. 2018. The analysis of the oral DNA virome reveals which viruses are widespread and rare among healthy young adults in Valencia (Spain).PLoS One 13:e0191867. [PDF]
• Rosas, T;García-Ferris, C; Domínguez-Santos,R; Llop, P; Latorre, A; Moya, A. 2018. Rifampicin treatment of Blattella germanica evidences a fecal transmission route of their gut microbiota.FEMS Microbiology Ecology 94:fiy002.[URL]
• Santos-García, D; Juravel, K; Freilich, S; Zchori-Fein, E; Latorre, A; Moya, A; Morin, S; and Silva, FJ. 2018. To B or not to B: comparative genomics suggests Arsenophonus as a source of B vitamins in whiteflies. Frontiers in Microbiology 9:2254.[PDF]
• Serena, C; Ceperuelo-Mallafré, V; Keiran, N; Queipo-Ortuño, MI; Bernal, R; Gómez-Huelgas, R; Urpi-Sarda, M; Sabater, M; Pérez-Brocal, V; Andrés-Lacueva, C; Moya, A; Tinahones, FJ; Fernández-Real, JM; Vendrell, J; Fernández-Veledo, S. 2018. Elevated circulating levels of succinate in human obesity are linked to specific gut microbiota.The ISME Journal 12:1642-1657. [PDF]
• Vázquez-Castellanos, JF; Serrano-Villar, S; Jiménez-Hernández, N; Soto del Rio, MD; Gayo, S; Rojo, D; Ferrer, M; Barbas, C; Moreno, S; Estrada, V; Rattei, T; Latorre, A; Moya, A; Gosalbes, MJ. 2018. Interplay between gut microbiota metabolism and inflammation in HIV infection.The ISME Journal 12:1964-1976. [URL]
• Zouari, S; Ben-Halima, MK; Reyes-Prieto, M; Latorre, A; Gil, R. 2018. Natural Occurrence of Secondary Bacterial Symbionts in Aphids from Tunisia, with a Focus on Genus Hyalopterus.: Environmental Entomology: 47:325-333.[URL]

2017

• Blasco, G; Moreno-Navarrete, JM; Rivero, M; Pérez-Brocal, V; Garre-Olmo, J; Puig, J; Daunis-i-Estadella, P; Biarnés, C; Gich, J; Fernández-Aranda, F; Alberich-Bayarri, A; Moya, A; Pedraza, S; Ricart, W; López, M; Portero-Otin, M; Fernandez-Real, JM. 2017. The gut metagenome changes in parallel to waist circumference, brain iron deposition and cognitive function. Journal of Clinical Endocrinology & Metabolism 102:2960-2973.[PDF]
• D'Auria, G; Dzunková, M; Peris-Bondia, F and Moya, A. 2017. Diversity of metagenomic studies - dissecting microbiomes. Ed. by F. Briand in Searching for Bacterial Pathogens in the Digital Ocean. CIESM Monograph 49, pp. 27-32. CIESM Publisher, Monaco and Paris.[URL]
• Falgueras-Cano, J; Carretero-Díaz, JM and Moya, A. 2017. Weighted fitness theory: an approach to symbiotic communities. Environmental Microbiology Reports 9: 44-46.[URL]
• Ferrer, M; Méndez-García, C; Rojo, D; Barbar, C and Moya, A. 2017. Antibiotic use and microbiome function. Biochemical Pharmacology 134: 114-126.[URL]
• García-Nuñez, M; Gallego, M; Montó, C; Capilla, S; Millares, L; Pomares, X; Espasa, M; Ferrari, R; Moya, A; Monsó, E; Pérez-Brocal, V. 2017. Bronchial Microbiome, PA biofilm-forming capacity and exacerbation in severe COPD patients colonized by P. Aerugirona. Future Microbiology 12(5),379–392. doi:10.2217/fmb-2016-0127.[URL]
• Gutiérrez-Preciado A.; Vargas-Chávez C.; Reyes-Prieto M.; Ordoñez O.F.; Santos-García D.; Rosas-Pérez T.; Valdivia-Anistro J.; Rebollar E.A.; Saralegui A.; Moya A.; Merino E.; Farías M.E.; Latorre A.; Souza V. 2017. The genomic sequence of Exiguobacterium chiriqhucha str. N139 reveals a species that thrives in cold waters and extreme environmental conditions. Peerj doi: 10.7717/peerj.3162.[PDF]
• Manzano-Marín, A.; Szabo, G.; Simon, J.C.; Horn, M.; Latorre, A. 2017. Happens in the best of subfamilies: Establishment and repeated replacements of co-obligate secondary endosymbionts within Lachninae aphids. Environmental Microbiology 19(1):393-408.[PDF]
• Martí, JM; Martínez-Martínez, D; Rubio, T; Gracia, C; Peña, M; Latorre, A; Moya, A; Garay, CP. 2017. Health and disease imprinted in the time variability of the human microbiome. MSystems doi: 10.1128/mSystems.00144-16.[PDF]
• Méndez-García, C; Moya, A and Ferrer, M. 2017. Factores que alteran el microbioma humano. Investigación y Ciencia.Diciembre: 15-17.[URL]
• Millares, L; Bermudo, G; Pérez-Brocal, V; Domingo, C; Garcia-Nuñez, M; Pomares, X; Moya, A; Monsó, E. 2017. The respiratory microbiome in bronchial mucosa and secretions from severe IgE-mediated asthma patients. Bmc Microbiology 17(1). doi:10.1186/s12866-017-0933-6.[PDF]
• Moya, A. 2017. Transevolución y Transhumanismo: reflexiones desde la ciencia. Cuadernos Hispanoamericanos (804): 40-53.[URL]
• Moya, A. 2017. Ciencia y pensamiento evolutivo. Evolución 12: 45-50.[URL]
• Moya, A. 2017. Filosofía para todos. Editado por Sergi Pascual en "Per què filosofia?", pp. 217-220. Editorial Neopatria, Alzira.[URL]
• Ponce-de-Leon, M; Tamarit, D; Calle-Espinosa, J; Mori, M; Latorre, A; Montero, F; Pereto, J. 2017. Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium. Frontiers in Microbiology 8:2290.[URL]
• Prieto-Gómez, B; Aguirre-Castañeda, A; Saldaña-Lorenzo, JA; León del Ángel, JF; Moya-Simarro, A. 2017. Síndrome metabólico y sus complicaciones: el pie diabético. The Journal of the Faculty of Medicine of UNAM 6(40):7-18.[PDF]
• Rojo, D; Méndez-García, C; Raczkowska, BA; Bargiela, R; Moya, A; Ferrer, M and Barbas, C. 2017. Exploring the human microbiome from multiple perspectives: factors altering its composition and function. FEMS Microbiology Reviews 41: 453-478.[URL]
• Santos-Garcia, D; Silva, FJ; Morin, S; Dettner, K; Kuechler, SM. 2017. The All-Rounder Sodalis: A New Bacteriome-Associated Endosymbiont of the Lygaeoid Bug Henestaris halophilus (Heteroptera: Henestarinae) and a Critical Examination of Its Evolution. Genome Biol. Evol. 9: 2893-2910.[PDF]
• Serrano-Villar, S; Vásquez-Domínguez, E; Pérez-Molina, JA; Sainz, T; de Benito, A; Latorre, A; Moya, A; Gosalbes, MJ and Moreno, S. 2017. HIV, HPV and microbiota: Partners in crime? AIDS 31: 591-594.[URL]
• Serrano-Villar, S; Vázquez-Castellano, JF; Vallejo, A; Latorre, A; Sainz, T; Ferrando-Martínez, s; Rojo, D; Martínez-Botas, J; del Romero, J; Madrid, N; Leal, M; Mosele, JI; Motilva, MJ; Barbas, C; Ferrer, M; Moya, A; Moreno, S; Gosalbes, MJ and Estrada, V. 2017. The effects of prebiotics on microbial dysbiosis, butyrate production and immunity in HIV-infected subjects. Mucosal Immunology 10: 1279-1293.[URL]
• Villar-García, J; Güerri-Fernández, R; Moya, A; González, A; Hernández, JJ; Lerma, E; Calzado, S; Guelar, A; Sorli, L; Horcajada, JP; Artacho, A; D'Auria, G; Knobel, H. 2017. Impact of probiotic Saccharomyces boulardii on the gut microbiome composition in HIV-treated patients: a double-blind, randomised, placebo-controlled trial. Plos One 12(4):e0173802.[PDF]

2016

• Calle-Espinosa, J.; Ponce-de-León, M.; Santos-García, D.; Silva, F.J.; Montero, F.; Peretó, J. 2016. Nature lessons: The whitefly bacterial endosymbiont is a minimal amino acid factory with unusual energetics. Journal of Theoretical Biololgy 407:303-317.[PDF]
• Džunková, M., Moya, A., Vázquez-Castellanos, J., Artacho, A., Chen, X., Kelly, C., D'Auria, G. 2016. Active and secretory IgA-coated bacterial fractions elucidate the dysbiosis in Clostridium difficile infection. mSPHERE 1: e00101-16.[PDF]
• Džunková, M.; D’Auria, G.; Xu, H.; Huang, J.; Duan, Y.; Moya, A.; Kelly, C.P.; Chen, X. 2016. The monoclonal antitoxin antibodies (actoxumab-bezlotoxumab) treatment facilitates normalization of the gut microbiota of mice with Clostridium difficile infection. Front. Cell. Infect. Microbiol 6:119.[PDF]
• Escrivá, L.; Manyes, L.; Barberà, M.; Martinez-Torres, D.; Meca, G. Determination of melatonin in Acyrthosiphon pisum aphids by liquid chromatography-tandem mass spectrometry. 2016. Journal of Insect Physiology.[PDF]
• Falgueras-Cano, J.; Carretero Díaz, J.M.; Moya, A. 2016. Weighted fitness theory: an approach to symbiotic communities. Environmental Microbiology Reports doi: 10.1111/1758-2229.12515.[PDF]
• Ferrer, M.; Méndez-García, C.; Rojo, D.; Barbas, C.; Moya, A. 2016. Antibiotic use and microbiome function. Biochemical Pharmacology pii: S0006-2952(16)30286-6.[PDF]
• Gosalbes, M.J., Vázquez-Castellanos, J.F., Angebault, C., Woerther, P.L., Ruppé, E., Ferrús, M.L., Latorre, A., Andremont, A., Moya, A. 2016. Carriage of enterobacteria producing extended spectrum beta-lactamases and composition of the gut microbiota in an Amerindian community. Antimicrobial Agents and Chemotherapy 60:507-514.[PDF]
• Klein, A., Schrader, L., Gil, R., Manzano-Marín, A., Flórez, L., Wheeler, D., Werren, J., Latorre, A., Heinze, J., Kaltenpoth, M., Moya, A., Oettler, J. 2016. A novel intracellular mutualistic bacterium in the invasive ant Cardiocondyla obscurior. The ISME Journal 10:376-388.[PDF]
• Latorre, A.; Manzano-Marín, A. 2016. Dissecting genome reduction and trait loss in insect endosymbionts. Annals of the New York Academy of Science doi: 10.1111/nyas.13222.[PDF]
• López-Labrador, F.X.; Natividad-Sanchoa, A.; Pisarevad, M.; Komissarovd, A.; Salvatierra, K.; Fadeevd, A.; Moya, A.; Grudinind, M.; Díez-Domingo, J.; Afanasieva, O.; Konovalovad, N.; Somininad, A.; Puig-Barberà, J. 2016. Genetic characterization of influenza viruses from influenza-relatedhospital admissions in the St. Petersburg and Valencia sites of the Global Influenza Hospital Surveillance Network during the 2013/14 influenza season. Journal of Clinical Virology 84:32-38.[PDF]
• Lloréns-Rico, V.; Cano, J.; Kamminga, T.; Gil, R.; Latorre, A.; Chen, W.H.; Bork, P.; Glass, J.I.; Serrano, L.; Lluch-Senar, M. 2016. Bacterial antisense RNAs are mainly the product of transcriptional noise. Science Advances 2(3):e1501363.[PDF]
• Manzano-Marín, A.; Latorre, A. 2016. Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica. Scientific Reports 6:32590.[PDF]
• Manzano-Marín, A.; Simon, J.C.; Latorre, A. 2016. Reinventing the wheel and making it round again: Evolutionary convergence in Buchnera-Serratia symbiotic consortia between the distantly related Lachninae aphids Tuberolachnus salignus and Cinara cedri. Genome Biology and Evolution. 8:1440-1458.[PDF]
• Manzano-Marín, A.; Szabo, G.; Simon, J.C.; Horn, M.; Latorre, A. 2016. Happens in the best of subfamilies: Establishment and repeated replacements of co-obligate secondary endosymbionts within Lachninae aphids. Environmental Microbiology doi: 10.1111/1462-2920.13633.[PDF]
• Martínez-Díaz, V.; Latorre, A.; Gil, R. 2016. Seasonal changes in the endosymbiotic consortia of aphids from the genus Cinara. Microbes and Environments 31(2):137-44.[PDF]
• Moya, A. 2016. Impacto de los antibióticos sobre la microbiota. Editado por G. Álvarez Calatayud, A. Marcos y A. Margolles en Probióticos, prebióticos y salud: evidencia científica, pp.71-76. Sociedad Española de Probióticos y Prebióticos y Editorial Ergón, Madrid.[PDF]
• Moya, A. 2016. Post-humanos y utopía. Paradigma Revista Universitaria de Cultura. 19:4-7. [PDF]
• Moya, A. 2016. Tecnología, evolución y transevolución. Editado por C.M. Romeo Casabona en Tecnologías convergentes: desafíos éticos y jurídicos, pp. 1-6. Editorial Comares, Granada.[URL]
• Moya, A., Ferrer, M. 2016. Functional redundancy-induced stability of gut microbiota subjected to disturbance. Trends in Microbiology 24:402-413. [PDF]
• Oceguera-Figueroa, A., Manzano-Marín, A., Kvist, S., Moya, A., Siddall, M.E., Latorre, A. 2016. Comparative mitogenomics of leeches (Annelida: Clitellata): genome conservation and Placobdella-specific trnD gene duplication. PLoS One 11: e0155441.[PDF]
• Rossi, M., Martínez-Martínez, D., Amaretti, A., Ulrici, A., Raimondi, S., Moya, A. 2016. Mining metagenomic whole genome sequences revealed subdominant but constant Lactobacillus population in the human gut microbiota. Environmental Microbiology Reports 8:399-406.[PDF]
• Serrano-Villar, S., Rojo, D., Martínez-Martínez, M., Deusch, S., Vázquez-Castellanos, J.F., Bargiela, R., Sainz, T., Vera, M., Moreno, S., Estrada, V., Gosalbes, M.J., Latorre, A., Seifert, J., Barbas, C., Moya, A., Ferrer, M. 2016. Gut bacteria metabolism impacts immune recovery in HIV-infected individuals. eBioMedicine 8:203-216.[PDF]
• Serrano-Villar, S., Rojo, D., Martínez-Martínez, M., Deusch, S., Vázquez-Castellanos, J.F., Sainz, T., Vera, M., Moreno, S., Estrada, V., Gosalbes, M.J., Latorre, A., Margolles, A., Seifert, J., Barbas, C., Moya, A., Ferrer, M. 2016. HIV infection results in metabolic alterations in the gut microbiota different from those induced by other diseases. Scientific Reports 6:26192.[PDF]
• Serrano-Villar, S.; Vásquez-Domínguez, E.; Pérez-Molina, J.A.; Sainz, T.; de Benito, A.; Latorre, A.; Moya, A.; Gosalbes, M.J.; Moreno, S. 2016. HIV, HPV and Microbiota: Partners in Crime?. AIDS doi: 10.1097/QAD.0000000000001352.[PDF]
• Serrano-Villar, S.; Vázquez-Castellanos, J.F.; Vallejo, A.; Latorre, A.; Sainz, T.; Ferrando-Martínez, S.; Rojo, D.; Martínez-Botas, J.; del Romero, J.; Madrid, N.; Leal, M.; Mosele, J.I.; Motilva, M.J.; Barbas, C.; Ferrer, M.; Moya, A.; Moreno, S.; Gosalbes, M.J.; Estrada, V. 2016. The Effects of Prebiotics on Microbial Dysbiosis, Butyrate Production and Immunity in HIV-Infected Subjects. Mucosal Immunology doi: 10.1038/mi.2016.122.[PDF]
• Vilanova, C.; Baixeras, J.; Latorre, A.; Porcar, M. 2016. The generalist inside the specialist: gut bacterial communities of two insect species feeding on toxic plants are dominated by Enterococcus sp. Frontiers in Microbiology 7:1005. [PDF]

2015

• Álvarez-Canales, G., Arellano-Álvarez, G., González-Domenech, C., de la Cruz, F., Moya, A., Delaye, L. 2015. Identification of xenologs and their characteristic low expression levels in the cyanobacterium Synechococcus elongates. Journal of Molecular Evolution 80:292-304.[PDF]
• Campos, M., Llorens, C., Sempere, J.M., Futami, R., Rodriguez, I., Carrasco, P., Capilla, R., Latorre, A., Coque, T.M., Moya, A., Baquero, F. 2015. A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES). Biology Direct 10:41.[PDF]
• Dzunkova, M., D’Auria, G., Moya A. 2015. Direct sequencing of human gut virome fractions obtained by flow cytometry. Frontiers in Microbiology 6:955. doi: 10.3389/fmicb.2015.00955.[PDF]
• García-López, R., Vázquez-Castellanos, J.F., Moya A. 2015. Fragmentation and coverage variation in viral metagenome assembiles, and their effect in diversity calculation. Frontiers in Bioengineering and Biotechnology 3:141. doi: 10.3389/fbioe.2015.00141.[PDF]
• García-Nuñez, M., Millares, L., Pomares, X., Ferrari, R., Pérez-Brocal, V., Gallego, M., Espasa, M., Moya, A., Monsó, E. 2015. Reply to “Chronic obstructive pulmonary disease lung microbiota diversity may be mediated by age or inhaled corticosteroid use”. Journal of Clinical Microbiology 53(3):1051.[PDF]
• López-Madrigal, S., Latorre, A., Moya, A., Gil R. 2015. The link between independent acquisition of intracellular gamma-endosymbionts and concerted evolution in Tremblaya princeps. Frontiers in Microbiology 6:642.[PDF]
• Manzano-Marín, A., Oceguera-Figueroa, A., Latorre, A., Jiménez-García, L.F., Moya, A. 2015. Solving a bloody mess: B-vitamin independent metabolic convergence among gammaproteobacterial obligate endosymbionts from blood-feeding arthropods and the leech Haementeria officinalis. Genome Biology and Evolution 7:2871-2884.[PDF]
• Martínez-Cano, D.J., Reyes-Prieto, M., Martínez-Romero, E., Partida-Martínez, L.P., Latorre, A., Moya, A., Delaye, L. 2015. Evolution of small prokaryotic genomes. Frontiers in Microbiology 5:742. doi: 10.3389/fmicb.2014.00742.[PDF]
• Millares, L., Pérez-Brocal, V., Ferrari, R., Gallego, M., Pomares, X., Garcia-Nuñez, M., Montón, C., Capilla, S., Monsó, E., Moya, A. 2015. Functional metagenomics of the bronchial microbiome in COPD. PLoS One 10(12):e0144448.[PDF]
• Mosele, J. I., Gosalbes, M.J., Macià, A., Rubió, L., Vázquez-Castellanos, J.F., Jiménez Hernández, N., Moya, A., Latorre, A., Motilva, M.J. 2015. Effect of daily intake of pomegranate juice on fecal microbiota and feces metabolites from healthy volunteers. Molecular Nutrition and Food Research. doi: 10.1002/mnfr.201500227.[PDF]
• Moya, A. 2015. Obsolescencia e intervención: a propósito de los entes biológicos sintéticos. Encuentros en la Biología 8:11-13.[PDF]
• Moya, A. 2015. The calculus of life. Towards a theory of life. Springer Briefs in Biology.[URL]
• Moya, A., Baquero, F. 2015. La historia natural de las epidemias. Pasajes de Pensamiento Contemporáneo 48:12-18.[URL]
• Novakova, J., Džunková, M., Musilova, S., Vlkova, E., Kokoska, L., Moya, A., D'Auria G. 2015. Selective growth-inhibitory effect of 8-hydroxyquinoline towards Clostridium difficile and Bifidobacterium longum subsp. longum in co-culture analyzed by flow cytometry. Journal of Medical Microbiology. 63(Pt 12):1663-9. doi: 10.1099/jmm.0.080796-0.[PDF]
• Pérez-Brocal, V., García-López, R., Nos, P., Beltrán, B., Moret, I., Moya, A. 2015. Metagenomic analysis of Crohn’s disease patients identifies variations in the virome and microbiome associated with disease status and treatment, and detects potential interactions and biological markers. Inflammatory Bowel Diseases.[Epub ahead of print].[URL]
• Pérez-Cobas, A., Maiques, E., Angelova, A., Carrasco, M.P., Moya, A., Latorre, A. 2015. Diet shapes the gut microbiota of the omnivorous cockroach Blatella germanica. FEMS Microbiology Ecology 91(4) pii: fiv022. doi: 10.1093/femsec/fiv022.[URL]
• Rao, Q., Rollat-Farnier, P.A., Zhu, D.T., Santos-García, D., Silva, F.J., Moya, A., Latorre, A., Klein, C.C., Vavre, F., Sagot, M. F., Liu, S.S., Mouton, L., Wang, X.W. 2015. Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci. BMC Genomics 16:226.[PDF]
• Reyes-Prieto, M., Vargas-Chávez, C., Latorre, A., Moya, A. 2015. SymbioGenomesDB: a database for the integration and access to knowledge on host-symbiont relationships. Database pii: bav109.[PDF]
• Rojo, D., Hevia, A., Bargiela, R., López, P., Cuervo, A., González, S., Suárez, A., Sánchez, B., Mártínez-Martínez, M., Milani, C., Ventura, M., Barbas, C., Moya, A., Suárez, A., Margolles, A., Ferrer, M. 2015. Ranking the impact of human health disorders on gut metabolism: Systemic lupus erythematosus and obesity as study cases. Scientific Reports 5:8310.[PDF]
• Rojo, D., Gosalbes, M.J., Ferrari, R., Pérez-Cobas, A.E., Hernández, E., Oltra, R., Buesa, J., Latorre, A., Barbas, C., Ferrer, M., Moya, A. 2015. Clostridium difficile heterogeneously impacts intestinal community architecture but drives stable metabolome responses. The ISME Journal 9(10):2206-20.[PDF]
• Rollat-Farnier, P.A., Santos-Garcia, D., Rao, Q., Sagot, M.F., Silva, F.J., Henri, H., Zchori-Fein, E., Latorre, A., Moya, A., Barbe, V., Liu, S.S., Wang, X.W., Vavre, F., Mouton, L. 2015. Two host clades, two bacterial arsenals: evolution through gene losses in facultative endosymbionts. Genome Biology and Evolution 7(3):839-855.[PDF]
• Santos-García, D., Vargas-Chávez, C., Moya, A., Latorre, A., Silva, F.J. 2015. Genome evolution in the primary endosymbiont of whiteflies sheds light on their divergence. Genome Biology and Evolution 7(3):873-888.[PDF]
• Vázquez-Castellanos, J.F., Serrano-Villar, S., Latorre, A., Artacho, A., Ferrús, M.L., Madrid, N., Vallejo, A., Sainz, T., Martínez-Botas, J., Ferrando-Martínez, S., Vera, M., Dronda, F., Leal, M., Del Romero, J., Moreno, S., Estrada, V., Gosalbes, M.J., Moya, A. 2015. Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals. Mucosal Immunology 8:760-772.[URL]

2014

• Becerra, A., Rivas, M., Garcia-Ferris, C., Lazcano, A., Peretó, J. 2014. A phylogenetic approach to the early evolution of autotrophy: the case of the reverse TCA and the reductive acetyl-CoA pathways. International Microbiology 17:91-97.[PDF]
• Carrasco, P., Pérez-Cobas, A.E., van de Pol, C., Baixeras, J., Moya A., Latorre, A. 2014. Succession of the gut microbiota in the cockroach Blattella germanica. International Microbiology 17, 99-109.[PDF]
• Cornish-Bowden, A., Pereto, J., Cardenas, M.L. 2014. Biochemistry and evolutionary biology: two disciplines that need each other?. J Biosci 39:13-27.[PDF]
• Cleaves, H.J., Lazcano, A., Ledesma, I., Negrón-Mendoza, A., Peretó, J., Silva, E. 2014. Herrera’s Plasmogenia and Other Collected Works. Early Writings on the Experimental Study of the Origin of Life. Nueva York, Springer.[URL]
• D'Auria, G., Džunková, M., Moya, A., Tomáška, M., Kološta, M., Kmet, V. 2014. Genome of Lactobacillus plantarum 19L3, a strain proposed as starter culture for Slovenska bryndza ovine cheese. Genome Announcements 2:e00292-14.[PDF]
• D’Auria, G., Schneider, M.V., Moya, A. 2014. Live genomics for pathogen monitoring in public health. Pathogens 3:93-108.[PDF]
• Dorado-Morales, P., Iglesias, A., Zafrilla, G., Valero, A., Torres, A., Miravet-Verde, S., de Loma, J., Mañas, M., Ruiz, A., Corman, A., Morales, L.J., Peretó, J., Vilanova, C., Porcar, M. 2014. Engineering Bacteria to Form a Biofilm and Induce Clumping in Caenorhabditis elegans. ACS Synth Biol 3 (12):941-943.[PDF]
• Džunková, M., Garcia-Garcerà, M., Martínez-Priego, L., D’Auria, G., Calafell, F., Moya, A. 2014. Direct sequencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate. PLoS One 9:e97379.[PDF]
• Encinas, D., Garcillán-Barcia, M.P., Santos Merino, M., Delaye, L., Moya, A., de la Cruz, F. 2014. Plasmid conjugation from proteobacteria as evidence of the origin of xenologous genes in cyanobacteria. Journal of Bacteriology 196:1551-1559.[PDF]
• Ferrer, M., Martins dos Santos, V.A.P., Ott, S., Moya, A. 2014. Gut microbiota disturbance during antibiotic therapy: a multi-omic approach. Gut Microbes 5:1.[PDF]
• García-López, R., Moya, A., Bagán, J.V., Pérez-Brocal, V. 2014. Retrospective case-control study of viral pathogen screening in proliferative verrucous leukoplakia lesions. Clinical Otolaryngology 39:272-280.[PDF]
• García-Núñez, M., Millares, L., Pomares, X., Ferrari, R., Pérez-Brocal, V., Gallego, M., Espasa, M., Moya, A., Monsó, E. 2014. Severity-related changes of bronchial microbiome in chronic obstructive pulmonary disease. Journal of Clinical Microbiology 52:4217-4223.[PDF]
• Gil, R. 2014. The minimal gene-set machinery. In Encyclopedia of Molecular Cell Biology and Molecular Medicine: Synthetic Biology, 2nd edition. Meyers RA (ed.). Wiley-VCH Verlag GmbH & Co. pp. 1-36.[URL]
• López-Madrigal, S., Beltrà, A., Resurrección, S., Soto, A., Latorre, A., Moya, A., Gil, R. 2014. Molecular evidence for ongoing complementarity and horizontal gene transfer in endosymbiotic systems of mealybugs. Frontiers in Microbiology 5:449.[PDF]
• Luque, V.J., Moya, A. 2014. Between the seventeenth and the twenty-first centuries. Teorema XXXIII:199-210.[PDF]
• Luque, V.J. 2014. Gustavo Caponi. 2011. La segunda agenda darwiniana. Contribución preliminar a una historia del programa adaptacionista. Theoria 79:169-171.[PDF]
• Millares, L., Ferrari, R., Gallego, M., García-Nuñez, M., Pérez-Brocal, V., Espasa, M., Pomares, X., Montón, C., Moya, A., Monsó, E. 2014. Bronchial microbiome of severe COPD patients colonised by Pseudomonas aeruginosa. European Journal of Clinical Microbiology and Infectious Diseases 33:1101-1111.[PDF]
• Moya, A. 2014. Ciencia, profesionales incultos y cultos diletantes. Combate. Periodismo Social y Humanístico 2: 28 de Agosto.[URL]
• Moya, A. 2014. Genómica, población y salud pública. Revista Española de Salud Pública 88:551-553.[PDF]
• Moya, A. 2014. El cálculo de la vida. Publicaciones de la Universitat de València.[URL]
• Moya, A. 2014. Biología y espíritu. Editorial Sal Terrae, Maliaño, Cantabria.[URL]
• Moya, A. 2014. Obsolescence and intervention: on synthetic-biological entities. Frontiers in Bioengineering and Biotechnology 4, doi: 10.3389/fbioe.2014.00059.[PDF]
• Oakeson, K.F., Gil, R., Clayton, A.L., Dunn, D.M., von Niederhausern, A.C., Hamil, C., Aoyagi, A., Duval, B., Baca, A., Silva, F.J., Vallier, A., Grant Jackson, D., Latorre, A., Weiss, R.B., Heddi, A., Moya, A., Dale, C. 2014. Genome degeneration and adaptation in a nascent stage of symbiosis. Genome Biology and Evolution 6(1):76-93.[PDF]
• Patiño-Navarrete, R., Piulachs, M.D., Belles, X., Moya, A., Latorre, A., Peretó, J. 2014. The cockroach Blattella germanica obtains nitrogen from uric acid through a metabolic pathway shared with its bacterial endosymbiont. Biology Letters 10:20140407.[PDF]
• Peretó, J. 2014. El primo neandertal ha venido a quedarse. SEBBM 179:44-45.[PDF]
• Peretó, J. 2014. El neandertal que porte a dins. Mètode 81 (primavera).[URL]
• Pérez-Cobas, A.E., Artacho, A., Ott, S., Moya, A., Gosalbes, M.J., Latorre, A. 2014. Structural and functional changes in the gut microbiota associated to Clostridium difficile infection. Frontiers in Microbiology doi 10.3389/fmicb.2014.00335.[PDF]
• Porcar, M., Peretó, J. 2014. Synthetic Biology, From iGEM to the Artificial Cell. Springer, SpringerBriefs in Biochemistry and Molecular Biology vol. 12, 77.[URL]
• Porcar, M., Déleclusse, A., Ibarra, J.E., Juárez-Pérez, V. 2014. Early transcription of Bacillus thuringiensis cry genes in strains active on Lepidopteran species and the role of gene content on their expression. Antonie Van Leeuwenhoek 105(6):1007-15.[PDF]
• Reyes-Prieto, M., Latorre, A., Moya, A. 2014. Scanty microbes, the “symbionelle” concept. Environmental Microbiology 16:335-338.[PDF]
• Reyes-Prieto, M., Oceguera-Figueroa, A., Snell, S., Negredo, A., Barba, E., Fernández, L., Moya, A., Latorre, A. 2014. DNA barcodes reveal the presence of the introduced freshwater leech Helobdella europea in Spain. Mitochondrial DNA 25: 387-393.[PDF]
• Santos-García, D., Latorre, A., Moya, A., Gibbs, G., Hartung, V., Dettner, K., Kuechler, S.M., Silva, F.J. 2014. Small but powerful, the primary endosymbiont of moss bugs, Candidatus Evansia muelleri, holds a reduced genome with large biosynthetic capabilities. Genome Biology and Evolution 6:1875-1893.[PDF]
• Santos-García, D., Rollat-Farnier, P.A., Beitia, F., Zchori-Fein, E., Vavre, F., Mouton, L., Moya, A., Latorre, A., Silva, F.J. 2014. The genome of Cardinium cBtQ1 provides insights into genome reduction, symbiont motility and its settlement in Bemisia tabaci. Genome Biology and Evolution 6:1013–1030.[PDF]
• Santos-García, D., Silva, F., Moya, A., Latorre, A. 2014. No exception to the rule: Candidatus Portiera aleyrodidarum cell wall revisited. FEMS Microbiology Letters 360:132-136.[URL]
• Soler, M., Cordero-Rivera, A., Fontdevila, A., Gosálvez, J., Moya, A. 2014. Darwin, la selección natural y Máximo Sandín. Evolución 9:45-54.[PDF]
• Vázquez-Castellanos, J.F., García-López, R., Pérez-Brocal, V., Pignatelli, M., Moya, A. 2014. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut. BMC Genomics 15:37.[PDF]
• Vilanova, C., Marín, M., Baixeras, J., Latorre, A., Porcar, M. 2014. Selecting microbial strains from pine tree resin: biotechnological applications from a terpene world. PLoS One 9(6):e100740.[PDF]
• Vilanova, C., Porcar, M. 2014. iGEM 2.0--refoundations for engineering biology. Nat Biotechnol 32(5):420-424.[PDF]
• Zafrilla, G., Iglesias, A., Marín, M., Torralba, L., Dorado-Morales, P., Racero, J.L., Alcaina, J.J., Morales, L.J., Martínez, L., Collantes, M., Gómez, L., Vilanova, C., Porcar, M. 2014. Towards light-mediated sensing of bacterial comfort. Lett Appl Microbiol 59(2):127-32.[PDF]

2013

• D’Auria, G., Peris-Bondia, F., Dzunkova, M., Mira, A., Collado, M.C., Latorre, A., Moya, A. 2013. Active and secreted IgA-coated bacterial fractions from the human gut reveal an under-represented microbiota core. Nature Sci. Rep. 3:3515.[PDF]
• Durbán, A., Abellán, J.J., Latorre, A., Moya, A. 2013. Effect of dietary carbohydrate restriction on an obesity-related Prevotella-dominated human faecal microbiota. Metagenomics 2. doi:10.4303/mg/235722.[PDF]
• Durbán, A., Abellán, J.J., Jiménez-Hernández, N., Artacho, A., Garrigues, V., Ortiz, V., Ponce, J., Latorre, A., Moya, A. 2013. Instability of the faecal microbiota in diarrhoea-predominant irritable bowel syndrome. FEMS Microbiology Ecology 86:581-589.[URL]
• Francino, P., Moya, A. 2013. Effects of antibiotic use on the microbiota of the gut and associated alterations of immunity and metabolism. EMJ Gastroenterol 1:74-80.[PDF]
• Garcia-Garcerà, M., Garcia-Etxebarria, K., Coscollà, M., Latorre, A., Calafell, F. 2013. A new method for extracting skin microbes allows metagenomic analysis of whole-deep skin. PLoS One 8(9):e74914.[PDF]
• Gosalbes, M.J., Llop, S., Vallès, Y., Moya, A., Ballester, F., Francino, M.P. 2013. Meconium microbiota types dominated by lactic acid or enteric bacteria are differentially associated with maternal eczema and respiratory problems in infants. Clin Exp Allergy. 43(2):198-211. [PDF]
• Hernández, E., Bargiela, R., Diez, M.S., Friedrichs, A., Pérez-Cobas, A.E., Gosalbes, M.J., Knecht, H., Martínez-Martínez, M., Seifert, J., von Bergen, M., Artacho, A., Ruiz, A., Campoy, C., Latorre, A., Ott, S.J., Moya, A., Suárez, A., Martins Dos Santos, V.A., Ferrer, M. 2013. Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity. Gut Microbes 4(4):306-315. [PDF]
• Latorre, A., Moya, A. 2013. The role of symbiosis in Evolution. En G. Trueba and C. Montúfar (Ed). Evolution from the Galapagos Social and Ecological Interactions in the Galapago Islands. Two Centuries after Darwin. Vol 2, pp.63-70. Editorial Springer. ISBN: 978-1-4614-6731-1 (Print) 978-1-4614-6732-8 (Online).
• López-Madrigal, S., Latorre, A., Porcar, M., Moya, A., Gil, R. 2013. Mealybugs nested endosymbiosis: going into the ‘matryoshka’ system in Planococcus citri in depth. BMC Microbiology 13:74. [PDF]
• López-Madrigal, S., Balmand, S., Latorre, A., Heddi, A., Moya, A., Gil, R. 2013. How does Tremblaya princeps get essential proteins from its nested partner Moranella endobia in the mealybug Planoccocus citri?. PLoS One 8: e77307.[PDF]
• Moya, A. 2013. Una reflexión sobre Biología Sintética a partir de la historia reciente del concepto de ‘célula mínima’. Sem@foro, Revista de la Sociedad Española de Microbiología. 55:31-33. [PDF]
• Moya, A. 2013. La ciencia en el futuro del hombre. Contraste, revista internacional de filosofía. Suplemento 18:317-323. [PDF]
• Moya, A. 2013. Ciencia y simbiosis: retos y logros. An. Real. Acad. Farm. 79(2):207-212. [PDF]
• Moya, A. 2013. La instrucción en ciencia. Ludus Vitalis 3:9.299-302.[URL]
• Moya, A. 2013. El càlcul de la vida. Publicaciones de la Universitat de València.[URL]
• Patiño-Navarrete, R., Moya, A., Latorre, A., Peretó, J. 2013. Comparative genomics of Blattabacterium cuenoti: the frozen legacy of an ancient endosymbiont genome. Genome Biol Evol. 5(2):351-361. [PDF]
• Pérez-Brocal, V., García-López, R., Vázquez-Castellanos, J.F., Nos, P., Beltrán, B., Latorre, A., Moya, A. 2013. Study of the viral and microbial communities associated with Crohn’s disease: a metagenomic approach. Clinical and Translational Gastroenterology 4:e36. [PDF]
• Pérez-Brocal, V., Latorre, A., Moya, A. 2013. Symbionts and pathogens: what is the difference?. Current Topics in Microbiology and Immunology 358:215-243.[URL]
• Pérez-Cobas, A.E., Artacho, A., Knecht, H., Ferrús, L., Friedichs, A., Ott, S., Moya, A., Latorre, A., Gosalbes, M.J. 2013. Differential effects of antibiotic therapy on the structure and function of human gut microbiota. PLoS One 8:e80201.[PDF]
• Pérez-Cobas, A.E., Gosalbes, M.J., Friedichs, A., Knecht, H., Artacho, A., Eismann, K., Otto, W., Rojo, D., Bargiela, R., von Bergen, M., Neulinger, S.C., Däumer, C., Heinsen, F.A., Latorre, A., Barbas, C., Seifert, J., dos Santos, V.M., Ott, S., Ferrer, M., Moya, A. 2013. Gut microbiota disturbance during antibiotic therapy: a multi-omic approach. Gut 62:1591-1601.[PDF]
• Porcar, M., Latorre, A., Moya, A. 2013. What symbionts teach us about modularity. Frontiers in Synthetic Biology 1: 14.[PDF]
• Rodríguez-Barreiro, R., Abendroth, C., Vilanova, C., Moya, A., Porcar, M. 2013. Towards a microbial thermoelectric cell. PLoS ONE. 8(2):e56358. [PDF]

2012

• Aguadé, M., Bertranpetit, J., Peretó, J. 2012. Genomes i evolució: impacte en la biologia actual. En "Treballs de la Societat Catalana de Biologia". Eds. Piferrer, F.Vol. 63, pags. 101-122. [PDF]
• Andrade, M.J., Rodas, E., Durbán, A., Moya, A., Córdoba, J.J. 2012. Characterization and control of microbial black spot spoilage in dry-cured Iberian ham. Food Control. 23:128-136. [PDF]
• Araúz, P.A., Peris-Bondia, F., Latorre, A., Serra, L., Mestres, F. 2012. Molecular evidence to suggest the origin of a colonization: Drosophila subobscura in America. Genetica. 139(11-12):1477-1486.[PDF]
• Baquero, F., Moya, A. 2012. Intelligibility in microbial complex systems:Wittgenstein and the score of life. Frontiers in Cellular and Infection Microbiology. 2(88):1-8.[PDF]
• Belda, E., Silva, F.J., Peretó, J., Moya, A. 2012. Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution. PLoS One. 7(1):e30652.[PDF]
• Cabrera-Rubio, R., Garcia-Núñez, M., Setó, L., Antó, J.M., Moya, A., Monsó, E., Mira, A. 2012. Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease. Journal of Clinical Microbiology 50(11):3562-3568.[PDF]
• Capelastegui, A., Quintana, J.M., España, P.P., Bilbao, A., Garin, O., Alonso, J., Astray, J., Cantón, R., Castilla, J., Castro, A., Delgado-Rodríguez, M., Godoy, P., Gónzález-Candelas, F., Martín, V., Mayoral, J.M., Pumarola, T., Tamames, S., Soldevila, N., Baricot, M., Domínguez, A. and the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain 2012. Score to identify the severity of adult patients with influenza A (H1N1) 2009 virus infection at hospital admission. Eur J Clin Microbiol Infect Dis. 31(10):2693-701.[PDF]
• Comas, I., González-Candelas, F. 2012. The evolution of horizontally transferred genes: a model for prokaryotes. En P. Francino (Ed) Horizontal Gene Transfer in Microorganisms", capítulo 5, pags. 75-91. Caister Academic Press. ISBN: 978-1-908230-10-2. [PDF]
• Cuevas, J.M., Domingo-Calap, P., Sanjuán R. 2012. The fitness effects of synonymous mutations in DNA and RNA viruses. Mol. Biol. Evol. 29(1):17-20. [PDF]
• Delgado-Rodríguez, M., Castilla, J., Godoy, P., Martín, V., Sáez, M., Soldevila, N., Alonso, J., Astray, J., Baricot, M., Cantón, R., Castro, A., González-Candelas, F., Mayoral, J.M., Quintana, J.M., Pumarola, T., Tamames, S., Domínguez, A., and the Working Group of the CIBERESP Cases and Controls Project in Pandemic Influenza, Spain. 2012. Prognosis of hospitalized patients with 2009 H1N1 influenza in Spain. Influence of neuraminidase inhibitors. J Antimicrob Chemother. 67(7):1739-1745. [PDF]
• Durbán, A., Abellán, J.J., Jiménez-Hernández, N., Latorre, A., Moya, A. 2012. Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of interaction. FEMS Microbiol Ecol. 81(2):427-37. [PDF]
• Durbán, A., Abellán, J.J., Jiménez-Hernández, N., Salgado, P., Ponce, M., Ponce, J., Garrigues, V., Latorre, A., Moya, A. 2012. Structural alterations of faecal and mucosa-associated bacterial communities in irritable bowel syndrome. Environmental Microbiology Reports. 4(2):242-247. [PDF]
• Dzunkova, M., D'Auria, G., Pérez-Villarroya, D., Moya, A. 2012. Hybrid sequencing approach applied to human fecal metagenomic clone libraries revealed clones with potential biotechnological applications. Plos One 7(10): e47654. [PDF]
• Furió, V., Garijo, R., Durán, M., Moya, A., Bell, J.C., Sanjuán, R. 2012. Relationship between within-Host Fitness and Virulence in the Vesicular Stomatitis Virus: Correlation with Partial Decoupling. Journal of Virology 86 (22): 12228-12236. [PDF]
• Garcia-Garcerà, M., Coscollà, M., Garcia-Etxebarria, K., Martín-Caballero, J., González-Candelas, F., Latorre, A., Calafell, F. 2012. Staphylococcus prevails in the skin microbiota of long-term immunodeficient mice. Environ Microbiol. 14(8):2087-98. [PDF]
• Gil, R., Latorre, A. 2012. Factors behind junk DNA in Bacteria. Genes 3:634-650. [PDF]
• Godoy, P., Castilla, J., Delgado-Rodríguez, M., Martín, V., Soldevila, N., Alonso, J., Astray, J., Baricot, M., Cantó, R., Castro, A., González-Candelas, F., Mayoral, J.M., Quintana, J.M., Pumarola, T., Tamames, S., Domínguez, A. 2012. Effectiveness of hand hygiene and provision of information in preventing influenza cases requiring hospitalization. Prev Med. 54(6):434-439.[PDF]
• González-Candelas, F., Astray, J., Alonso, J., Castro, A., Cantón, R., Galán, J.C., Garin, O., Saez, M., Soldevila, N., Baricot, M., Castilla, J., Godoy, P., Delgado-Rodríguez, M., e Martín, V., Mayoral, J.M., Pumarola, T., Quintana, J. M., Tamames, S., Domínguez, A, and the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain. 2012. Sociodemographic Factors and Clinical Conditions Associated with Hospitalization in Influenza A (H1N1) 2009 Virus Infected Patients in Spain, 2009-2010. PLoS ONE 7(3): e33139. [PDF]
• González-Candelas, F., Francino, M. P. 2012. Barriers to Horizontal Gene Transfer: Fuzzy and Evolvable Boundaries. En P. Francino (Ed) Horizontal Gene Transfer in Microorganisms, capítulo 4, pags. 47-73. Caister Academic Press. ISBN: 978-1-908230-10-2. [PDF]
• González-Candelas, F., López-Labrador, F.X. 2012. Hypervariable regions. Encyclopedia of Genetics, 2nd edition. Stanley Maloy and Kelly Hughes (Editors). Elsevier, Oxford. [PDF]
• González-Domenech, C.M., Belda, E., Patiño-Navarrete, R., Moya, A., Peretó, J., Latorre, A. 2012. Metabolic stasis in an ancient symbiosis: genome-scale metabolic networks from two Blattabacterium cuenoti strains, primary endosymbionts of cockroaches. BMC Microbiology. 12(Suppl 1):S5.[PDF]
• Gosalbes, M.J., Abellán, J.J., Durbán, A., Pérez-Cobas, A.E., Latorre, A., Moya, A. 2012. Metagenomics of human microbiome: beyond 16s rDNA. Clin Microbiol. Infect. 18 (Suppl.4): 47–49.[PDF]
• Krüger, B., Liang, C., Prell, F., Fieselmann, A.; Moya, A., Schuster, S., Völker, U., Dandekar, T. 2012. Metabolic Adaptation and Protein Complexes in Prokaryotes. Metabolites 2: 940-958. [PDF]
• Latorre, A., Pascual-Calaforra, L.F. 2012. Genómica y proteómica. Edit by César Benito Jiménez and Francisco Javier Espino Nuño in ‘Genética. Conceptos esenciales’. pp. 441-478. Editorial Médica Panamericana, Madrid. [URL]
• Lira, F., Hernández, A., Belda, E., Sánchez, M.B., Moya, A., Silva, F.J., Martínez, J.L. 2012. Whole-Genome sequence of Stenotrophomonas maltophilia D457, a clinical isolate and a model strain. J. Bacteriol. 194(13):3563.[PDF]
• Manzano-Marin, A., Lamelas, A., Moya, A., Latorre, A. 2012. Comparative genomics of Serratia spp.: two paths towards endosymbiotic life. Plos One 7(10): e47274. [PDF]
• Martínez, F., Lafforgue, G., Morelli, M. J., González-Candelas, F., Chua, N.H., Daròs, J.A., Elena, S.F. 2012. Ultradeep sequencing analysis of population dynamics of virus escape mutants in RNAi-mediated resistant plants. Mol Biol Evol. [PDF]
• Moya, A. 2012. Genomics and health. Edit. by E. Muñoz in Biotechnology in the Mirror. Instituto Roche. [URL]
• Moya, A. 2012. Minimal genomes and reducible complexity. Edit by Roberto Kolter and Stanley Maloy in ‘Microbes and Evolution: The World That Darwin Never Saw’. pp.17-23. Amer Society for Microbiology, Washington, D.C, EEUU. [URL]
• Moya, A., Peretó, J. 2012. ¿Hacia la fabricación de vida?. Vida Artificial. Pasajes 438:4-5. [PDF]
• Moya, A., Peretó, J. 2012. Entrevista a Ricard Solé: La vida artificial abrirá las puertas a una nueva biología. Pasajes 38:53-58. [PDF]
• Palop-Esteban, M., Segarra-Moragues, J.G., González-Candelas F. 2012. Polyploid origin, genetic diversity and population structure of the tetraploid sea lavender Limonium narbonense Miller (Plumbaginaceae). Genetica 139(10):1309-22. [PDF]
• Pascual-Calaforra, L.F., Latorre, A. 2012. Ingeniería Genética. Edit by César Benito Jiménez and Francisco Javier Espino Nuño in ‘Genética. Conceptos esenciales’. pp. 397-422. Editorial Médica Panamericana, Madrid. [URL]
• Peretó, J. 2012. Out of fuzzy chemistry. From prebiotic chemistry to metabolic networks. Chem Soc Rev. 41(16):5394-403. [PDF]
• Vale P.F., Choisy M., Froissart R., Sanjuán R., Gandon S. 2012. The distribution of mutational fitness effects of phage ϕX174 on different hosts. Evolution, 66(11):3495-507. [URL]

2011

• Araúz, P.A., Peris-Bondia, F., Latorre, A., Serra, L., Mestres, F. 2011. Molecular evidence to suggest the origin of a colonization: Drosophila subobscura in America. Genetica. 139:1477–1486. [PDF]
• Augustinos, A.A, Santos-Garcia, D., Dionyssopoulou, E., Moreira, M., Papapanagiotou, A., Scarvelakis, M., Doudoumis, V., Ramos, S., Aguiar, A.F., Borges, P.A., Khadem, M., Latorre, A., Tsiamis, G., Bourtzis, K. 2011. Detection and characterization of wolbachia infections in natural populations of aphids: is the hidden diversity fully unraveled?. PLoS One 6(12):e28695 [PDF]
• Belda, E., Pedrola, L., Peretó, J., Martínez-Blanch, J.F., Montagud, A., Navarro, E., Urchueguía, J., Ramón, D., Moya, A., Porcar, M. 2011. Microbial diversity in the midguts of field and lab-reared populations of the European corn borer Ostrinia nubilalis. PLoS One. 6(6):e21751 [PDF]
• Belda-Ferré, P., Cabrera-Rubio, R., Moya, A., Mira, A. 2011. Mining virulence genes using metagenomics. PLoSOne 6:e24975. [PDF]
• Bernet, G.P., Muñoz-Pomer, A, Domínguez-Escribá, L., Covelli, L., Bernad, L., Ramasamy, S., Futami, R., Sempere, J.M., Moya, A., Llorens, C. 2011. LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome. Mobile Genetic Elements. 1(2):97-102.[PDF]
• Bracho, M. A., González-Candelas, F., Valero, A., Córdoba, J., Salazar, A. 2011. Enterovirus Co-infections and Onychomadesis after Hand, Foot, and Mouth Disease, Spain, 2008. Emerging Infectious Diseases 17(12): 2223-2231. [PDF]
• Charles, H., Balmand, S., Lamelas, A., Cottret, L., Pérez-Brocal, V., Burdin, B., Latorre, A., Febvay, G., Colella, S., Calevro, F., Rahbé, Y. 2011. A genomic reappraisal of symbiotic function in the Aphid/Buchnera symbiosis: reduced transporter sets and variable membrane organisations. Plos One. 6(12):e29096. [PDF]
• Christie, J.S., Picornell, A., Moya, A., Ramon, M.M., Castro, J.A. 2011. Mitochondrial DNA effects on fitness in Drosophila subobscura. Heredity (Edinb). 107(3):239-45. [PDF]
• Coscollá, M., Comas, I., González-Candelas, F. 2011. Quantifying nonvertical inheritance in the evolution of Legionella pneumophila. Molecular Biology and Evolution 28(2): 985-1001. [PDF]
• D'Auria, G., Galán, J.C., Rodríguez-Alcayna, M., Moya, A., Baquero, F., Latorre, A. 2011. Complete genome sequence of Acidaminococcus intestini RYC-MR95, a Gram-negative bacterium from the phylum Firmicutes. J Bacteriol. 193(24):7008-9. [PDF]
• Delaye, L., González-Domenech, C.M. ,Garcillán-Barcia, M.P. ,Peretó, J., de la Cruz, F., Moya A. 2011. Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942. BMC Genomics 12;12:25. [PDF]
• Delaye, L., Moya, A. 2011. Abundance and distribution of the highly iterated palindrome 1 (HIP1) among prokaryotes. Mob Genet Elements. 1(3):159-168. [PDF]
• Durbán, A., Abellán, J.J., Jiménez-Hernández, N., Ponce, M., Ponce, J., Sala, T., D&prima;Auria, G., Latorre, A., Moya, A. 2011. Assessing gut microbial diversity from feces and rectal mucosa. Microbial Ecology 61: 123-133. [PDF]
• González-Alba, J.M., Holguín, A., García, R., García-Bujalance, S., Alonso, R., Suárez, A., Delgado, R., Cardeñoso, L., González, R., García-Bermejo, I., Portero F., de Mendoza, C., González-Candelas, F., Galán, J.C. 2011. Molecular surveillance of HIV-1 in Madrid, Spain: a phylogeographic analysis. Journal of Virology 85(20): 10755-10763. [PDF]
• González-Candelas, F., Comas, I., Martínez, J.L., Galán, J.C., Baquero, F. 2011. The evolution of antibiotic resistance. En M. Tibayrenc (Ed.) "Genetics and Evolution of Infectious Diseases". Cap. 12, pags. 305-337. Elsevier, London. ISBN 978-0-12-384890-1. [PDF]
• González-Candelas, F., López-Labrador, F. X., Bracho, M. A. 2011. Recombination in HCV. Viruses. 3(10):2006-2024 [PDF]
• González-Toril, E., Peretó, J. 2011. Autotrophy. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap.1, pags. 131-135. Springer, Heidelberg. [PDF]
• Gosalbes, M.J., Durbán, A., Pignatelli, M., Abellan, J.J., Jiménez-Hernández, N., Pérez-Cobas, A.E., Latorre, A., Moya, A. 2011. Metatranscriptomic approach to analyze the functional human gut microbiota. PLoS One. 6(3):e17447. [PDF]
• Lamelas, A., Gosalbes, M.J., Manzano-Marín, A., Peretó, J., Moya, A., Latorre, A. 2011. Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont. PLoS Genet. 7(11):e1002357. [PDF]
• Lamelas, A., Gosalbes, M.J., Moya, A., Latorre, A. 2011. New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina. Applied and Environmental Microbiology. 77(13):4446-4454. [PDF]
• López Davia, J., Hernández Bel, P., Zaragoza Ninet, V., Bracho, M. A., González-Candelas, F., Salazar, A., Gobernado, M., Febrer Bosch, I. 2011. Onychomadesis outbreak in Valencia, Spain associated with Hand, Foot, and Mouth disease caused by enteroviruses. Pediatric Dermatology 28(1): 1-5. [PDF]
• López-Madrigal, S., Latorre, A., Porcar, M., Moya, A., Gil, R. 2011. Complete Genome Sequence of "Candidatus Tremblaya princeps" Strain PCVAL, an Intriguing Translational Machine below the Living-Cell Status. J Bacteriol. 193(19):5587-8 [PDF]
• Martinez, M., Moya, A. 2011. Natural selection, creativity, and multi-level causation. Philosophy and Theory in Biology 3:e202. [PDF]
• Martró, E., Valero, A., Jordana-Lluch, E., Saludes, V., Planas, R., González-Candelas, F., Ausina, V., Bracho, M.A. 2011. Hepatitis C virus sequences from independent patients confirm the existence and transmissibility of subtype 2q, a rare subtype circulating in the metropolitan area of Barcelona. Journal of Medical Virology 83(5): 820-826. [PDF]
• Moya, A., 2011. Biología Sintética Editado por C.M. Romeo Casabona en Enciclopedia de Bioderecho y Bioética. Vol. 1, págs. 254-257. Editorial Comares. Granada. [URL]
• Moya, A., 2011. Los virus de ARN y la evolución. Cuadernos de Sostenibilidad y Patrimonio Natural 20: 27-32.[PDF]
• Moya, A., 2011. Revisión del libro de F.J. Ayala La evolución de un evolucionista. [URL]
• Neef, A., Latorre, A., Peretó, J., Silva, F.J., Pignatelli, M., Moya, A. 2011. Genome economization in the endosymbiont of the wood roach Cryptocercus punctulatus due to drastic loss of amino acid synthesis capabilities. Genome Biol Evol. 3:1437-48. [PDF]
• Palero, F., González-Candelas, F., Pascual, M. 2011. Microsatelight - Pipeline to expedite microsatellite analysis. Journal of Heredity 102: 247-249. [PDF]
• Peretó, J. 2011. Book Review: Creating life in the lab: How new discoveries in synthetic biology make a case for the Creator, by Fazale Rana. En "Reports of the National Center for Science Education". 31(6): 8.1-8.3 [PDF]
• Peretó, J. 2011. Calvin-Benson cycle. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap. 1, pags. 228-229. Springer, Heidelberg. [PDF]
• Peretó, J. 2011. Citric Acid Cycle. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap.1, pags. 314-316. Springer, Heidelberg. [PDF]
• Peretó, J. 2011. Fermentation. En "Encyclopedia of Astrobiology". Eds. Gargaud M, Amils R, Cernicharo J, Cleaves III HJ, Irvine WM, Pinti DL, Viso M. Cap.1, pags. 583-584. Springer, Heidelberg. [PDF]
• Peretó, J. 2011. Origin and evolution of metabolisms. En "Origins and Evolution of Life: An Astrobiological Perspective". Eds. Gargaud, M, López-García, P, Martin, H. Pags. 270-287. Cambridge University Press, Cambridge, UK. ISBN 978-0521761314. [PDF]
• Pérez-Brocal, V., Gil, R., Moya, A., Latorre, A. 2011. New Insights on the Evolutionary History of Aphids and Their Primary Endosymbiont Buchnera aphidicola. Int J Evol Biol. 2011:250154. [PDF]
• Peris-Bondia, F., Latorre, A., Artacho, A., Moya, A., D'Auria, G. 2011. The active human gut microbiota differs from the total microbiota. PLoS One. 6(7)e22448. [PDF]
• Pignatelli, M., Moya, A. 2011. Evaluating the fidelity of de novo short read metagenomic assembly using simulated data. PLoS One. 6(5):e19984. [PDF]
• Porcar, M., Danchin, A., de Lorenzo, V., Dos Santos, V.A., Krasnogor, N., Rasmussen, S. and Moya, A. 2011. The ten grand challenges of synthetic life. Systems and Synthetic Biology 5:1-9. [PDF]
• Reimundo, P., Pignatelli, M., Alcaraz, L.D., D'Auria, G., Moya, A., Guijarro, J.A. 2011. Genome sequence of Lactococcus garvieae UNIUD074, isolated in Italy from a lactococcosis outbreak. J Bacteriol. 193(14):3684-5. [PDF]
• Riera, J., Moya, A. 2011. ¿Existe antagonismo entre selección natural y autoorganización? Ludus Vitalis 35:333-339.[PDF]
• Rivas, M., Becerra, A., Peretó, J., Bada, J.L., Lazcano, A. 2011. Metalloproteins and the Pyrite-based Origin of Life: A Critical Assessment. Origins of Life and Evolution of the Biospheres. 41(4):347-356. [PDF]
• Rodríguez-Sánchez, B., Alonso, M., Catalán, P., Sánchez Conde, M., González-Candelas, F., Giannella, M., Bouza, E., de Viedma, D.G. 2011. Genotyping of a nosocomial outbreak of pandemic influenza A/H1N1 2009. J Clin Virol. 52(2):129-32. [PDF]
• Roig, F., González-Candelas, F., Amaro, C. 2011. Domain organization and evolution of multifunctional autoprocessing repeats-in-toxin (MARTX) toxin in Vibrio vulnificus. Applied and Environmental Microbiology 77: 657-668. [PDF]
• Sanjuán, E., González-Candelas, F., Amaro, C. 2011. Polyphyletic origin of Vibrio vulnificus biotype 2 as revealed by sequence-based analysis. Applied and Environmental Microbiology 77: 688-695. [PDF]
• Sanjuán, R., Bordería, A.V. 2011. Interplay between RNA structure and protein evolution in HIV-1. Mol Biol Evol. 28(4):1333-8. [PDF]
• Sassera, D, Lo N, Epis S, D'Auria G, Montagna M, Comandatore F, Horner D, Peretó J, Luciano AM, Franciosi F, Ferri E, Crotti E, Bazzocchi C, Daffonchio D,Sacchi L, Moya A, Latorre A, Bandi C. 2011. Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor. Mol Biol Evol. 28(12):3285-96. [PDF]
• Vilanova, C., Hueso, Á., Palanca, C., Marco, G., Pitarch, M., Otero, E., Crespo, J., Szablowski, J., Rivera, S., Domínguez-Escribà, L., Navarro, E., Montagud, A., de Córdoba, P.F., González, A., Ariño, J., Moya, A., Urchueguía, J. and Porcar, M. 2011. Aequorin-expressing yeast emits light under electric control. Journal of Biotechnology 152(3):93-5. [PDF]
• Zúñiga, M., Gómez-Escoín, C. L., González-Candelas, F. 2011. Evolutionary history of the OmpR/IIIA family of signal transduction two component systems in Lactobacillaceae and Leuconostocaceae. BMC Evolutionary Biology 11: 34. [PDF]

2010

• Belda, E., Moya, A., Bentley, S., Silva, F. 2010. Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies. BMC Genomics 11: 449. [PDF]
• Castro, J.A., Barrio. E., González, A., Picornell, A., Ramon, M.M., Moya, A. 2010. Nucleotide diversity of a ND5 fragment confirms that population expansion is the most suitable explanation for the mtDNA haplotype polymorphism of Drosophila subobscura. Genetica, 138: 819-829 [PDF]
• Christie, J.S., Picornell, A., Moya, A., Ramon, M.M., Castro, J.A. 2010. Dynamics of the mtDNA haplotype variability in a Drosophila subobscura population over a two-year period. The Open Evolution Journal 4: 23-30. [PDF]
• Cortés, T., Ortiz-Rivas, B., Martínez-Torres, D. 2010. Identification and characterization of circadian clock genes in the pea aphid Acyrthosiphon pisum. Insect Molecular Biology 19: 123-139. [PDF]
• Coscollá, M., Fenollar, J., Escribano, I., González-Candelas, F. 2010. Legionellosis outbreak associated with asphalt paving machine, Spain, 2009. Emerging Inefctious Diseases 9: 1381-1387. [PDF]
• D'Auria, G., Jimenez-Hernandez, N., Peris-Bondia, F., Moya, A., Latorre, A. 2010. Legionella pneumophila pangenome reveals strain-specific virulence factors. BMC Genomics 11: 181. [PDF]
• Delaye, L., Gil, R., Pereto, J., Latorre, A., Moya, A. 2010. Life With a Few Genes: A Survey on Naturally Evolved Reduced Genomes. The Open Evolution Journal 4: 12-22. [PDF]
• Delaye, L., Moya, A. 2010. Evolution of reduced prokaryotic genomes and the minimal cell concept: Variations on a theme. BioEssays 32 (4): 281-287. [PDF]
• Domingo-Calap, P., Pereira-Gómez, M.,Sanjuán, R. 2010. Selection for thermostability can lead to the emergence of mutational robustness in an RNA virus. Journal of Evolutionary Biology 23: 2453-2460. [PDF]
• Gerardo, N.M., Altincicek, B., Anselme, C., Atamian, H., Barribeau, S.M., de Vos, M., Duncan, E., Evans, J.D., Gabaldon, T., Ghanim, M., Heddi, A., Kaloshian, I., Latorre, A., Moya, A., Nakabachi, A., Parker, B.J., Perez-Brocal, V., Pignatelli, M., Rhabe, Y., Ramsey, J.S., Spragg, C., Tamames, J., Tamarit, D., Tamborindeguy, C., Vincent-Monegat, C., Vilcinskas, A. 2010. Immunity and other defenses in pea aphids, Acyrthosiphon pisum. Genome Biology 11: R21. [PDF]
• Gil, R., Latorre, A., Moya, A. 2010. Evolution of prokaryote-animal symbiosis from a genomic perspective. Microbiology Monographs 19: 207-233 [PDF]
• González-Candelas, F., López-Labrador, F.X. 2010. Clinical relevance of genetic heterogeneity in HCV. Future Virology 5(1): 33-49 [PDF]
• González-Candelas, F., Sanjuán, R. 2010. The population genetics of humana viral pathogens, in Microbial Population Genetics (Ed: Jianping Xu), p.167-188. [URL]
• Gosalbes, M.J., Latorre, A., Lamelas, A., Moya, A. 2010. Genomics of intracellular symbionts in insects. International Journal of Medical Microbiology 300: 271-278. [PDF]
• Huerta-Cepas, J., Marcet-Houben, M., Pignatelli, M., Moya, A., Gabaldón, T. 2010. The pea aphid phylome: A complete catalogue of evolutionary histories and arthropod orthology and paralogy relationships for Acyrthosiphon pisum genes. Insect Molecular Biology 19 (Suppl. 2): 13-21. [PDF]
• Llorens, C., Futami, R., Covelli, L., Domínguez, L., Viu, J.M., Tamarit, D., Aguilar-Rodríguez, J., Vicente-Ripollés, V. M., Fuster, G., Bernet, G., Maumus, F., Muñoz-Pomer, A., Sempere, J., Latorre, A. and Moya, A. 2010. The Gypsy Database (GyDB) of Mobile Genetic Elements: Release 2.0 Nucleic Acids Research 39(Database Issue):D70-74. [PDF]
• Matas, M., Picornell A., Cifuentes, C., Payeras, A., Bassa, A., Homar, F., López-Labrador, F.X., Moya, A., Ramon, M.A., Castro, J.A. 2010. Relating the liver damage with hepatitis C virus polymorphism in core region and human variables in HIV-1-coinfected patients. Infecttion, Genetics, and Evolution 10: 1252-1261. [PDF]
• Moya, A. 2010. Synthetic biology, Gödel, and the blind watchmaker. Biological Theory 4: 319-322. [PDF]
• Novais, A., Comas, I., Baquero, F., Cantón, R., Coque, T.M., Moya, A., González-Candelas, F., Galán, J.C. 2010. Evolutionary Trajectories of Beta-Lactamase CTX-M-1 Cluster Enzymes: Predicting Antibiotic Resistance. PLoS Pathogens 6(1):e1000735. [PDF]
• Ortiz-Rivas, B., Martínez-Torres, D. 2010. Combination of molecular data support the existence of three main lineages in the phylogeny of aphids (Hemiptera: Aphididae) and the basal position of the subfamily Lachninae. Molecular Phylogenetics and Evolution 55: 305-317. [PDF]
• Peris, J.B., Davis, P., Cuevas, J.M., Nebot. R., Sanjuán, R. 2010. Distribution of mutational fitness effects caused by single-nucleotide substitutions in bacteriophage f1. Genetics 185: 603-609. [PDF]
• Porcar, M., Moya, A. 2010. Craig Venter's Synthetic Bacteria: The Dawn of a New Era? The Journal of Cosmology 8: e4. [URL]
• Sánchez, B., Zúñiga, M., González-Candelas, F., González de los Reyes-Gavilán,C., Margolles,A.. 2010. Bacterial and eukaryotic phosphoketolases: phylogeny, distribution and evolution. Journal of Molecular Microbiology and Biotechnology 18: 37-51. [PDF]
• Sanjuán, R. 2010. Mutational fitness effects in RNA and single-stranded DNA viruses: common patterns revealed by site-directed mutagenesis studies. 2010. Philosophical Transactions of the Royal Society of London B 365: 1975-1982. [PDF]
• Sanjuán, R., Nebot, M., Chirico, N., Mansky, L.M., Belshaw, R. 2010. Viral mutation rates. Journal of Virology 84: 9733-9748. [PDF]
• Sanjuán, R., Bradwell, K., 2010. Book review: The Evolution and Emergence of RNA viruses (Author: Edward. C. Holmes). Systematic Biology 59: 610-612. [PDF]
• Tamames, J., Abellan, J.J., Pignatelli, M., Camacho, A., Moya, A. 2010. Environmental distribution of prokaryotic taxa. BMC Microbiology 10:85. [PDF]
• The International Aphid Genomics Consortium (including Andrés Moya, Amparo Latorre, David Martínez, Miguel Pignatelli, Vicente Pérez-Brocal, Javier Tamames, Carlos Lloréns, Teresa Cortés, Benjamín Ortiz-Rivas, Daniel Tamarit, Ximo Pechuán, José Aguilar). 2010. Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biology 8(2): e1000313. [PDF]