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2023

  • Beatriz Soriano; Ahmed Ibrahem Hafez; Fernando Naya-Català; Federico Moroni; Roxana Andreea Moldovan; Socorro Toxqui-Rodríguez; María Carla Piazzon; Vicente Arnau; Carlos Llorens; Jaume Pérez-Sánchez "SAMBA: Structure-Learning of Aquaculture Microbiomes Using a Bayesian Approach" Genes 2023, 14(8), 1650; https://doi.org/10.3390/genes14081650
  • Džunková, M., La Clair, J.J., Tyml, T. et al. "Synthase-selected sorting approach identifies a beta-lactone synthase in a nudibranch symbiotic bacterium". Microbiome 11, 130 (2023). https://doi.org/10.1186/s40168-023-01560-8
  • Vicente Arnau, Wladimiro Díaz-Villanueva, Jorge Mifsut-Benet, Paula Villasante, Beatriz Beamud, Paula Mompó, Rafael Sanjuan, Fernando González-Candelas, Pilar Domingo-Calap, Mária Džunková "Inference of the Life Cycle of Environmental Phages from Genomic Signature Distances to Their Hosts" Viruses 2023, 15(5), 1196; https://doi.org/10.3390/v15051196
  • Magdalena Díaz; Pablo Monfort-Lanzas; Cristian Quiroz-Moreno; Erika Rivadeneira; Pablo Castillejo; Vicente Arnau; Wladimiro Díaz; Spiros N. Agathos; Félix J. Sangari; Pablo Jarrín-V; C. Alfonso Molina. "The microbiome of the ice-capped Cayambe Volcanic Complex in Ecuador" Frontiers in Microbiology. Sec. Terrestrial Microbiology. 14:1154815. 05 May 2023. https://doi.org/10.3389/fmicb.2023.1154815
  • Rebeca de la Fuente, Wladimiro Díaz-Villanueva, Vicente Arnau, Andrés Moya. "Genomic Signature in Evolutionary Biology: A Review" Biology 2023, Volume 12, Issue 2, 322. https://doi.org/10.3390/biology12020322 [pdf]
  • Hafez, AI; Soriano, B.; Elsayed, AA; Futami, R.; Ceprián, R.; Ramos-Ruiz, R.; Martínez, G.; Roig, FJ; Torres-Font, MA; Naya-Catala, F.; Calduch-Giner, JA; Trilla-Fuertes, L.; Gámez-Pozo, A.; Arnau, V.; Sempere-Luna, JM; Pérez-Sánchez, J.; Gabaldón, T.; Llorens, C. "Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite". Genes 2023, Volume 14, Issue 2, 267. https://doi.org/10.3390/genes14020267

2022

  • Vicente Arnau, Marina Barba-Aliaga, Gaurav Singh, Javier Ferri, José García-Martínez, José E. Pérez-Ortín "A feedback mechanism controls rDNA copy number evolution in yeast independently of natural selection". PLOS ONE. September 1, 2022. https://doi.org/10.1371/journal.pone.0272878
  • Olmo-Uceda, M.J.; Muñoz-Sánchez, J.C.; Lasso-Giraldo, W.; Arnau, V.; Díaz-Villanueva,W.; Elena, S.F. "DVGfinder: A Metasearch Tool for Identifying Defective Viral Genomes in RNA-Seq Data". Viruses 2022, 14, 1114. https://doi.org/10.3390/v14051114
  • Díaz M, Quiroz-Moreno C, Jarrín-V P, Piquer-Esteban S, Monfort-Lanzas P, Rivadeneira E, Castillejo P, Arnau V, Díaz W, Sangari FJ, Molina CA "Soil Bacterial Community Along an Altitudinal Gradient in the Sumaco, a Stratovolcano in the Amazon Region" Frontiers in Forests and Global Change. 24 March 2022. https://doi.org/10.3389/ffgc.2022.738568
  • S. Piquer-Esteban, S. Ruiz-Ruiz, V. Arnau, W. Diaz, A. Moya. "Exploring the universal healthy human gut microbiota around the World" Computational and Structural Biotechnology Journal. 2022. https://doi.org/10.1016/j.csbj.2021.12.035

2021

  • María Cebriá-Mendoza, María A. Bracho, Cristina Arbona, Luís Larrea, Wladimiro Díaz, Rafael Sanjuán, José M. Cuevas "Exploring the Diversity of the Human Blood Virome". Viruses 2021, 13(11), 2322; https://doi.org/10.3390/v13112322
  • P. Sebastian-Leon, A. Devesa-Peiro, A. Aleman, A. Parraga-Leo ,V. Arnau, A. Pellicer, P. Diaz-Gimeno. "Transcriptional changes through menstrual cycle reveal a global transcriptional derepression underlying the molecular mechanism involved in the window of implantation" Molecular Human Reproduction. 8 abril 2021. https://doi.org/10.1093/molehr/gaab027
  • Carlos Llorens, Beatriz Soriano, Maria A.Navarrete-Muñoz, Ahmed Hafez, Vicente Arnau, Jose Miguel Benito, Toni Gabaldon, Norma Rallon, Jaume Pérez-Sánchez, Mart Krupovic. "Reverse-Transcribing Viruses (Belpaoviridae, Metaviridae, and Pseudoviridae)". Encyclopedia of Virology, 4th Edition, vol. 3, pp. 653-666. Oxford: Academic Press. https://doi.org/10.1016/B978-0-12-809633-8.21514-8
  • María Cebriá-Mendoza, Cristina Arbona, Luís Larrea, Wladimiro Díaz, Vicente Arnau, Carlos Peña, Juan Vicente Bou, Rafael Sanjuán & José M. Cuevas. "Deep viral blood metagenomics reveals extensive anellovirus diversity in healthy humans". Scientific Reports volume 11, Article number: 6921 (2021). https://doi.org/10.1038/s41598-021-86427-4

2020

  • Andrés Moya, José L. Oliver, Miguel Verdú, Luis Delaye, Vicente Arnau, Pedro Bernaola-Galván, Rebeca de la Fuente, Wladimiro Díaz, Cristina Gómez-Martín, Francisco M. González, Amparo Latorre, Ricardo Lebrón & Ramón Román-Roldán. "Driven progressive evolution of genome sequence complexity in Cyanobacteria". Scientific Reports volume 10, Article number: 19073 (2020). DOI: https://doi.org/10.1038/s41598-020-76014-4.
  • Almudena Devesa-Peiro; Patricia Sebastian-Leon; Francisco Garcia-Garcia; Vicente Arnau; Alejandro Aleman; Antonio Pellicer; Patricia Diaz-Gimeno. "Uterine disorders affecting female fertility: what are the molecular functions altered in endometrium?". Fertility and Sterility. Volume 113, Issue 6, June 2020, Pages 1261-1274. https://doi.org/10.1016/j.fertnstert.2020.01.025
  • Jose Manuel Martí,  Luis F. Arias,  Wladimiro Díaz,  Vicente Arnau,  Antonio Rodriguez-Franco,  Carlos P. Garay. "Metagenomic dynamics in Olea europaea after root damage and Verticillium dahliae infection". BMC Plant Biology. 2020. doi: https://doi.org/10.1101/555185
  • Elena Cristina Rusu, Vicente Arnau Llombart, Wladimiro Díaz Villanueva, Azahara Fuentes Trillo, Carmen Ivorra, Dolores Olivares, Felipe J Chaves. "Primer design parameters effect on target sequencing and novel pipelines to ensure amplicon coverage". ESCS (European Student Council Symposium). 2020.
  • Pablo Monfort, Vicente Arnau, Wladimiro Diaz-Villanueva, Bárbara Hernando, Conrado Martínez-Cadenas. "Comparativa de los Variant Callers para la detección de mutaciones somáticas en análisis de muestra única". VIII Congreso de Investigación Biomédica (CIB2020). Días 5 a 7 de febrero de 2020. Valencia.

2019

  • Juanes, J.; Perez-Gil, D.; Gomez-Peregrina, D.; Furio, P.; Medina, I.; Garcia-Garcia, F.; Arnau, V.; Chaves, F.J.; Garcia-Garcia, A. ; Marin-Garcia, P . "PanelMaps: a genome-scale coverage QC and CNV advisor web application". 52nd European Society of Human Genetics (ESHG). The Swedish Exhibition & Congress Center, Gothenburg, Sweden. June 15–18, 2019.
  • Vicente Arnau, Wladimiro Díaz, Ricardo Ferris, Miguel Lozano, Sergio Casas. "La informàtica en el màster en Bioinformàtica". Jornadas de intercambio de experiencias de innovación docente en la ETSE-UV. 19 de julio de 2019. Burjasot (Valencia). 

2018

2017

  • Carolina Monzó, José Miguel Juanes, Pablo Marín-García, Felipe Javier Chaves, Vicente Arnau, Ana Bárbara García-García. Libro: Genómica Medica. Una guía práctica. Capítulo 2: SECUENCIACIÓN MASIVA EN PARALELO: DEL ADN A LOS DATOS. Editor: Manuel Perez Alonso. ISBN: 978-84-947865-0-1. 2017.
  • Jose Manuel Martí. "Recentrifuge: robust comparative analysis and contamination removal for metagenomic data".
  • José M. Juanes; Asunción Gallego; Joaquín Tárraga; Felipe J. Chaves; Pablo Marín-Garcia; Ignacio Medina; Vicente Arnau; Joaquín Dopazo. "VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy". BMC Bioinformatics (2017) 18:421. DOI.
  • Antonio Fabregat, Konstantinos Sidiropoulos, Guilherme Viteri, Oscar Forner, Pablo Marin-Garcia, Vicente Arnau, Peter D’Eustachio, Lincoln Stein and Henning Hermjakob. "Reactome pathway analysis: a highperformance in-memory approach" BMC Bioinformatics (2017) 18:142. DOI 10.1186/s12859-017-1559-2.
  • Jose Manuel Martí, Daniel Martínez-Martínez, Teresa Rubio, César Gracia, Manuel Peña, Amparo Latorre, Andrés Moya, Carlos P. Garay. "Health and Disease Imprinted in the Time Variability of the Human Microbiome". mSystems. 2017 Mar 21;2(2). DOI.

2016

  • Joaquin Tarraga, Asunción Gallego, Vicente Arnau, Ignacio Medina and Joaquin Dopazo. "HPG pore: an efficient and scalable framework for nanopore sequencing data". BMC Bioinformatics. DOI. Published: 27 February 2016